Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq900588 509 2e-139 seq94777 370 1e-97 seq542521 91.5 2e-13 seq141992 86.0 7e-12 >seq900588 Length=4557 Score = 509 bits (564), Expect = 2e-139 Identities = 685/951 (72%), Gaps = 2/951 (0%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATCGT 169502 || ||||| |||||| | ||||| || |||| | || ||| | | ||| || || | Sbjct 3042 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTAT 3100 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 || ||||| || || ||||| || ||||| || || || | || || || | ||||| Sbjct 3101 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTC 3160 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 ||| | ||||| ||||| || ||||||||||| || |||| | || || ||||| Sbjct 3161 TTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGG 3220 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | | ||||| |||||||| |||||||| ||| |||||||||| ||||| || |||||||| Sbjct 3221 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGG 3280 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACA 169742 ||||||| || | | | | |||||| | ||||| | | || ||||| | | Sbjct 3281 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 3340 Query 169743 GTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACC 169802 ||||||||| | | | | || |||||||||||||| ||||||||| || || || Sbjct 3341 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 3400 Query 169803 AGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGA 169862 || | ||||| ||||| ||||| | ||||| ||||||| || || ||||| Sbjct 3401 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGA 3460 Query 169863 TGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCA 169922 ||||||||| |||| ||||| |||||||||||||||||| | || ||||| |||||||| Sbjct 3461 TGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 3520 Query 169923 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTT 169982 ||||| || |||||||| ||||||||| ||| ||||| || | ||||| || || | Sbjct 3521 CAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCT 3580 Query 169983 ATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCA 170042 |||| || ||||||||||| | || || || | | ||||| ||||| || || | Sbjct 3581 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACTACTGAAAA 3640 Query 170043 AGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 170102 || || || | ||||| || || || ||||| ||||| || || || || || || Sbjct 3641 TGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGC 3700 Query 170103 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAG 170162 || || ||||| ||||| || | |||||||| |||||| ||||||||||| | Sbjct 3701 TGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 3760 Query 170163 TCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTAT 170222 | ||||||||||| | || | || ||||| ||| | | ||||| || || | ||||| Sbjct 3761 TTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTAT 3820 Query 170223 CTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAA 170282 | || ||||| |||||| | ||||||||||| || |||||||| || |||||| | | Sbjct 3821 TAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 3880 Query 170283 CGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGT 170342 || | | || |||| |||| | | ||| | || ||| | ||||||||||| Sbjct 3881 AGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGT 3940 Query 170343 TATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 170393 ||||| ||| | ||||| ||||||||||| |||||| |||| ||| ||| Sbjct 3941 AATGCACGAACGTAATGCTCACAACTTCCCTCTAGACTTAGCTGCTGTTGA 3991 >seq94777 Length=2712 Score = 370 bits (410), Expect = 1e-97 Identities = 710/1045 (68%), Gaps = 35/1045 (3%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| | | || ||||||||| || || ||||| || || ||||||||||||| Sbjct 1066 TTTGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGC 1125 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| |||||| || || Sbjct 1126 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTT 1185 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || ||||| ||| || Sbjct 1186 GTAACTTCTTGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTA 1245 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || ||||||||||| || |||| |||| | | || | |||| || | || | Sbjct 1246 ACCGCAGCAGTTTCTACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 1300 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||||||||||| ||| |||||||| ||| | || ||| |||||| | Sbjct 1301 GGGGGCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTT 1360 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 ||||||| | || || | |||| ||| |||||||||||| | | |||||||| | | Sbjct 1361 TTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTG 1420 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | | ||| | | ||||| || ||| || ||||||||| | || || || | Sbjct 1421 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTT 1480 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | || || || |||||||| || || |||||||||| || || | Sbjct 1481 TTGTTTCGGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTT 1540 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 1541 TTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGT 1600 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| |||||||| |||||||| ||||| ||| || |||| | || | |||| || | Sbjct 1601 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 1660 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 ||||||| ||||| || | ||||| | | ||| ||| | | || || Sbjct 1661 TTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGAC------GGTGATGGTG------ 1708 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 |||| || |||||||| ||| | || || || | ||||||||||| | Sbjct 1709 -----CAAA----TACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 1759 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | || || ||| | || ||||| || || |||||| ||||||| || || ||| | | Sbjct 1760 TGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 1819 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||| ||| ||||| | || || || |||| ||| | |||| |||| || Sbjct 1820 GGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCG 1879 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || || | || || ||| | | || || || ||||| || || || || | |||| Sbjct 1880 TAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAG 1939 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 | ||||| || || ||||||||||||||||| || ||||| ||| | || || ||||| Sbjct 1940 CGGAAGATCCTGAATTCGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTC 1999 Query 171484 GAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | || |||||| || |||| || || || ||||| || | ||||||| || || || Sbjct 2000 GTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 2057 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 ||||| | || ||||| |||||| Sbjct 2058 TCTACCACGTGGAAACGCTCTTTAA 2082 >seq542521 Length=235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 170575 TAGGATGGTCTGGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCT 170634 ||||||||||||| || || || | |||||||| || | | | || |||||||| Sbjct 6 TAGGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTA 65 Query 170635 TAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGG 170694 |||||| || || || || || |||||||| ||||| | | |||||| | || Sbjct 66 CAGGGACAACTTTTGTAACTTCTTGGTATACCCATGGATTGGAAAGTTCATATTTGGAAT 125 Query 170695 GATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTC 170751 ||||||| ||| |||| |||||||||| || |||| |||| | | || | || Sbjct 126 GATGTAATTTCTTAACCACAGCAGTTTCTACCCCTG-----CCAATAGTTTAGCACACTC 180 Query 170752 TT--CTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGT 170799 || || | || ||||| || |||||| |||| ||| |||||||| Sbjct 181 TTTGTTGCTACTATGGGGGCCAGAAGCATAAGGGGATTTTACTCGTTGGT 230 >seq141992 Length=6480 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| || ||||| ||| | || || ||||| || ||||||||||| || || Sbjct 3734 TGGAGCAGATGTTTGCCATCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 3793 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | |||||||| ||||| Sbjct 3794 TGGTCCTGGCATGGGTCCTATTGGTGT 3820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564168464295840