Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq900588 493 1e-134 seq94777 354 9e-93 seq141992 95.1 1e-14 seq542521 84.2 3e-11 >seq900588 Length=4557 Score = 493 bits (546), Expect = 1e-134 Identities = 702/988 (71%), Gaps = 0/988 (0%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| |||| ||| | || | |||| | || ||||||||||| | Sbjct 3000 TTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTG 3059 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | || ||||| || || ||| Sbjct 3060 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCT 3119 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | || || ||| | |||||||| | ||||| ||||| Sbjct 3120 CCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 3179 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || |||| | || || || || | ||||| ||||| || Sbjct 3180 ATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 3239 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||||||||||||| || | | | Sbjct 3240 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 3299 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 3300 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 3359 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||| Sbjct 3360 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 3419 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || || | ||||| || || |||||||||||||| |||| ||| Sbjct 3420 GTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATC 3479 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||||||| | || ||||| |||||||| ||||| || |||||||| Sbjct 3480 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCA 3539 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 ||||||||| ||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 3540 TTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 3599 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || |||||| ||||| || | || Sbjct 3600 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGT 3659 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 ||||| || || ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 3660 TACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGC 3719 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| |||||||||||| | | | ||||||||| | || Sbjct 3720 CGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3779 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| ||| | | ||||| || || | ||||| |||| ||||| |||||| Sbjct 3780 GCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 3839 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 || || |||||||| ||||||||||| || || ||| | | ||| || || ||| Sbjct 3840 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACT 3899 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| | | ||| | || ||||| ||||||||||| ||||| ||| | ||||| Sbjct 3900 TGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCT 3959 Query 172780 CACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||||| ||||| | ||| ||| Sbjct 3960 CACAACTTCCCTCTAGACTTAGCTGCTG 3987 >seq94777 Length=2712 Score = 354 bits (392), Expect = 9e-93 Identities = 703/1043 (67%), Gaps = 31/1043 (3%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| | | || ||||||||| || || |||||||| || | ||||||||||| Sbjct 1066 TTTGATACTATGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGC 1125 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| ||| || || || Sbjct 1126 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTT 1185 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | ||| ||| ||| | ||||| || || ||| Sbjct 1186 GTAACTTCTTGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTA 1245 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || |||||||| || || |||| |||| | | || | |||| || | || | Sbjct 1246 ACCGCAGCAGTTTCTACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 1300 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| || ||||||||||| || ||||||| ||| | || || ||||||| | Sbjct 1301 GGGGGCCAGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTT 1360 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 ||||||| | || || | |||| ||| |||||||||||| | || || ||||| | | Sbjct 1361 TTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTG 1420 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | | ||| | | ||||| || ||| || ||||||||| | || || || | Sbjct 1421 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTT 1480 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | || | || || ||||| ||||| |||||||||| || || | Sbjct 1481 TTGTTTCGGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTT 1540 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 1541 TTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGT 1600 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 |||| |||||||| |||||||| ||||| ||| || |||| | || | ||||| || | Sbjct 1601 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 1660 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 ||||||| ||||| || | ||||| | | ||| ||| ||| ||| Sbjct 1661 TTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGAC------------GGTGATGGT- 1707 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 | | || ||| | || ||| | || || || | |||||||||||| | Sbjct 1708 --------GCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 1759 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || | || || ||| | || ||||| || || |||||| | || ||||| || ||| | | Sbjct 1760 TGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 1819 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||| ||| | ||| | || ||||| |||| ||| | |||| | || || Sbjct 1820 GGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCG 1879 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | || || | || || ||| | | || || |||||||| || || || || | |||| Sbjct 1880 TAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAG 1939 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 | |||||||| || ||||||||||||||||| || ||||| ||| | || || ||||| Sbjct 1940 CGGAAGATCCTGAATTCGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTC 1999 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965 | || |||||| || || ||||| || ||||| || | |||| || || || || Sbjct 2000 GTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTC 2059 Query 173966 TACCAAGAGGTAACGCACTTTAA 173988 ||||| | || ||||| |||||| Sbjct 2060 TACCACGTGGAAACGCTCTTTAA 2082 >seq141992 Length=6480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || ||||| ||| | || |||||||| || ||||||||||| || || Sbjct 3734 TGGAGCAGATGTTTGCCATCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 3793 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| | |||||||||||||| Sbjct 3794 TGGTCCTGGCATGGGTCCTATTGGTGT 3820 >seq542521 Length=235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 172999 GGATGGTCTGGTCTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTA 173058 ||||||||||| || || || | ||||||||||| | || | || |||||||| | Sbjct 8 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACA 67 Query 173059 GGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGA 173118 || || || || || || || |||||||| ||||| | | | ||||||| | ||| || Sbjct 68 GGGACAACTTTTGTAACTTCTTGGTATACCCATGGATTGGAAAGTTCATATTTGGAATGA 127 Query 173119 GCAAACTTTTTAACAGCAGCAGTCTCCACACCTG 173152 || || ||||| ||||||| || || |||| Sbjct 128 TGTAATTTCTTAACCACAGCAGTTTCTACCCCTG 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572777297793360