Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq900588 598 5e-166 >seq900588 Length=4557 Score = 598 bits (662), Expect = 5e-166 Identities = 718/973 (74%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 3970 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 3911 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||| ||||| || | | || ||||| || Sbjct 3910 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 3851 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||| || || || Sbjct 3850 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACT 3791 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 3790 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 3731 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| |||||||||||||| || || |||||| Sbjct 3730 AAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTCTCTTCCTCTTGA 3671 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || |||||||| | || || ||||||| |||||||| | ||| | | ||| Sbjct 3670 CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGATCAAACTAGAG 3611 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 3610 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 3551 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 |||||||| || ||||||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 3550 AACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCCTGGAATACAATCATAAAGTTG 3491 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || | ||||| |||||||| || ||||| || | ||| || Sbjct 3490 AAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTAA 3431 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 3430 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 3371 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 3370 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 3311 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| |||||||| |||| ||| || || | | | Sbjct 3310 AAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGAT 3251 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | || || || ||| | |||| | ||| Sbjct 3250 GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATAGCA 3191 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || |||||||| || | | |||||||| || ||||| || ||||| ||| Sbjct 3190 CCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCGCGAATACCATCA 3131 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| | | ||| || || || || ||||| ||| || | | || Sbjct 3130 ATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 3072 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| || | || | ||| || | |||| || | Sbjct 3071 GGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTAT 3012 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 3011 CCAGTTGCAGAAG 2999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556435475191080