Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq957357 96.9 4e-15 seq1980960 89.7 6e-13 >seq957357 Length=1670 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||||| ||| | ||||| | || | || | |||||| || || || ||| Sbjct 1515 CCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAACATAGGAACTATCCCA 1456 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||| || ||| |||| | || || || || Sbjct 1455 TTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGAG 1396 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | |||||| || || |||||||| ||| Sbjct 1395 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGATT 1336 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||||||| |||| Sbjct 1335 CCCTCGATGCTATCATCTTTCAT 1313 >seq1980960 Length=13069 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||| | || |||| | || ||| || ||||| ||| Sbjct 1894 CCACCTTGATCAACATAGCGTGCAGTGTCATTGAAAACACGTAGCATGGGAACAATTCCA 1835 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| ||| |||| | | || ||||||| Sbjct 1834 TTAGAAGTTCCATTTGTTCCACGAATGTAACTGCCAGTAGCCCGGACGTTGTGAATTGAA 1775 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAAA 48537 | ||| || || || || ||| ||| |||||| ||| || |||||||||| Sbjct 1774 ACACCAATCCCTCCAGCTGATTTGCTTATGGAAGCACATTCCGAG--AGAGTATCATAAA 1717 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 |||| || |||||||| ||| |||| Sbjct 1716 TTCCCTCAATACTATCGTCTTTCAT 1692 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 1576 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 1517 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| | | |||| || ||||| | ||| ||||| || | ||| || | ||||| Sbjct 1516 GTATGTTTTGACAGCAGACTCAATATCATCCTTG-TGTATCCCAACAGAAACCCTCATTA 1458 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||||| ||| |||||||| |||| ||| | | ||||| ||||| || | || | Sbjct 1457 ACATATGTTGCGGTCTTTCCACAACTTTCCCACCAACTTTCAGTAGATAGGACCTCTCAA 1398 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||| ||||| | | || |||||| |||||| ||| || Sbjct 1397 GCGTCTTAAACCCAAAGAAATCATAGTCAAAGTCTCTATCATAAATTAT 1349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547508719529640