Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq844687 107 2e-17 seq12001 102 6e-16 seq70678 96.9 3e-14 >seq844687 Length=8129 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 || || | || || || || || |||||||| || ||||| | || || || || || | Sbjct 3153 TTTCGAAGGCTGTGATCACAGTTCCAGCATACTTCAATGATGCCCAGCGGCAGGCAACCA 3094 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | || ||||| || |||||||||||| |||||| | |||||||||||||||||||||| Sbjct 3093 AGGACGCTGGTCGAATTGCTGGACTTGATGTTCAAAGGATTATCAATGAACCTACTGCTG 3034 Query 550512 CTGCACTTGCATATGGA 550528 |||| || | |||||| Sbjct 3033 CTGCTCTGTCTTATGGA 3017 >seq12001 Length=6810 Score = 102 bits (112), Expect = 6e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || ||||| ||||| ||||| || || ||||| | || | ||||| || || |||||| Sbjct 3539 GCTGTAATTACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAAGCCACCAAGGATGCT 3598 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || ||||||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 3599 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 3657 >seq70678 Length=6846 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || ||||||||||| | ||| || || |||||||| |||||| Sbjct 4634 ACTGTTCCGGCGTACTTCAATGACTCACAGAGAACAGCAACAAAGGATGCTGGCCGTATT 4693 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || ||||| | ||||| || ||||| ||||| || |||||||| | ||||| ||||| Sbjct 4694 GCAGGACTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCTCTTGCTTATGGT 4753 Query 550529 CTTGATAA 550536 |||| || Sbjct 4754 TTTGAGAA 4761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3919407223786490