Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq980070 197 4e-46 seq52972 91.5 5e-14 >seq980070 Length=1613 Score = 197 bits (218), Expect = 4e-46 Identities = 247/332 (74%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| |||||| |||||||||||||||||||||||| ||| | |||||||||||||| | Sbjct 530 ACGGCAAGCTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCT 471 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||||||||| |||||| ||||||||||| | | || | ||| ||| ||| | | Sbjct 470 TCAATATCGCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAG 411 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 | ||||| ||||||||||||||||||||| ||||||||| ||||||||| | || |||| Sbjct 410 TGGGCGACTTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGG 351 Query 25000 -CGACCGAACAACTGTCGCGCACGCACA-CGGGCTAT-CCGTGGCTGGCGCTGAATC--- 25053 ||| | || | |||||| || | | || | | || |||||| | || | Sbjct 350 TCGAGC-TGCAGC--TCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCA 294 Query 25054 ACCGCGACTCGATCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGC 25113 | | ||| ||| | ||||| |||| ||||||| || | |||||||| |||| Sbjct 293 AGCCCGATTCGCTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGC 234 Query 25114 ACCCGGTCATCAAGGCCCCCGTGGCCGTGTAA 25145 | || | ||||||||||| ||||| |||||| Sbjct 233 ATCCCGCGATCAAGGCCCCGGTGGCTGTGTAA 202 >seq52972 Length=254 Score = 91.5 bits (100), Expect = 5e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| |||||| ||||||||||||||||||||||| | | ||||||||||||| || Sbjct 104 ACGGCAAGCTGTCGTGCCAGCTCTACCAGCGCAGCGCCCATATCTTCCTCGGCGTGCGGT 45 Query 24880 TCAATATCGCGAGCTACGCGCTGCT 24904 |||| || || ||||||||||| || Sbjct 44 TCAAGATTGCCAGCTACGCGCTTCT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160121823949648