Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq900588 544 2e-150 seq780762 82.4 2e-11 >seq900588 Length=4557 Score = 544 bits (602), Expect = 2e-150 Identities = 716/988 (72%), Gaps = 6/988 (1%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || ||||||||||| || ||||| || ||||| |||||||| Sbjct 3991 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 3932 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | || |||||||| | || ||||||||||| | || | || | |||| Sbjct 3931 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 3872 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || || ||||| || || || || || || ||||||||||| | || | | Sbjct 3871 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAA 3812 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 || || | ||| || | || ||||||||||||| |||||| |||||| || Sbjct 3811 GCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAG 3752 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || ||||| Sbjct 3751 TTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATA 3692 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| |||||||| ||||| || ||||| || || | || ||||||| |||| Sbjct 3691 TTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTA 3632 Query 36324 GTTTCACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCT 36380 ||||| | || || | |||| || |||| || ||||||||| ||||| | Sbjct 3631 GTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAA 3575 Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || |||||||| || || ||||| | ||| ||||| |||||||||||||| ||||| ||| Sbjct 3574 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 3515 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 ||||| || |||| |||||| |||||||| || || || || | ||||||||||||||| Sbjct 3514 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAA 3455 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 || || ||||| |||| |||||| | ||||| |||||| || ||||||||||| ||| Sbjct 3454 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 3395 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620 ||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 3394 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 3335 Query 36621 CCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 36680 |||| ||| | | ||||| | ||||| | ||||| || | ||| || || || Sbjct 3334 CCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCA 3275 Query 36681 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 36740 || ||||||||||| || | | |||||||||||| |||||||| ||||| | ||||| Sbjct 3274 TTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATC 3215 Query 36741 GCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 36800 || || | || | || || |||||||| || ||||||||||| ||||| | || Sbjct 3214 GCCGCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCA 3155 Query 36801 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAA 36860 || |||||||| ||||||||||| ||||| || ||||| ||||| | || || || | | Sbjct 3154 GAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATA 3095 Query 36861 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 36920 ||| | | ||| || || | | ||||||||| | || || ||||| || | || Sbjct 3094 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAA 3035 Query 36921 AGGCGGTTGTTTGTACTTGTAACCCAGT 36948 || || || | || || || | ||||| Sbjct 3034 AGACGATTTTCAGTGCTAGTTATCCAGT 3007 >seq780762 Length=275 Score = 82.4 bits (90), Expect = 2e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||| ||| || ||||||||||| || ||||| || ||||| |||||||| Sbjct 183 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 242 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAA 36056 || | || |||||||| | || ||||||||| Sbjct 243 CCAAGGTTAGCACGGTTGATGATATCAGCCCAA 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146741926489954