Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq18201 360 5e-95 seq30077 84.2 5e-12 >seq18201 Length=11482 Score = 360 bits (398), Expect = 5e-95 Identities = 441/593 (74%), Gaps = 8/593 (1%) Strand=Plus/Plus Query 895 CCGGCCACGGCATCGGTAAGTCCGCTTTCATCTCGATGCTGATTAACTGGGGCATGTCCA 954 |||| ||||| ||||| |||||||| | ||| ||||| | |||||| ||| || Sbjct 241 CCGGTCACGGTATCGGCAAGTCCGCGCTGATCGGCATGCTCACCGGCTGGGGGATGGACA 300 Query 955 CCTGCGAAGACTGCAAGGTTGTGGTTACCGCCAACACCGACAATCAGCTGCGTACAAAGA 1014 ||||||| |||||| | ||||| |||||||||||||| |||||||| || |||| Sbjct 301 CCTGCGAGGACTGCCGCATCGTGGTGACCGCCAACACCGAGGGCCAGCTGCGCACGAAGA 360 Query 1015 CATGGCCTGAAATCATCAAATGGTCGAACCTGGCTATCACGAAAGAATGGT-TTACCTGC 1073 | ||||| |||||| || ||| | |||| | ||||| | | |||| || ||| Sbjct 361 CCTGGCCGGAAATCTCGAAGTGGCGGCGCCTGACCATCACCGAGCACTGGTGGAACGTGC 420 Query 1074 ACCGCCACGGCGATGTACAGCAACGATCCAGGTCACGACAAACGCTGGCGCGCTGACGCA 1133 | |||| | |||| ||| ||||| ||||| | ||| || |||||||||| ||||| Sbjct 421 -CGGCCATGTCGATCTACTCGAACGAGCCAGGCCGCGAGAAGAGCTGGCGCGCCGACGCC 479 Query 1134 ATCCCGTGGTCTGAGCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAAGCGC 1193 | || ||| |||||||| |||||||| ||||| || ||||||||| || | |||||| Sbjct 480 ACGCCCTGGAGCGAGCACAACACCGAGGCGTTCGCCGGCCTGCACAACAAGGGCAAGCGC 539 Query 1194 ATTATCGTGGTGTTCGACGAAGCGTCCAACATTGCCGATCTGGTATGGGAAGTAGCAGAG 1253 || ||||| | | |||||| || || || || ||||| ||| |||||||| | || Sbjct 540 ATCATCGTCATCTACGACGAGGCCTCGAAGATCGCCGACAAGGTCTGGGAAGTCACCGAC 599 Query 1254 GGTGCGCTTACGGACGAGGATACCGAAATTATTTGGGTGGCGTTTGGTAACCCGACGCGT 1313 || || ||||| |||||||| |||||||| || ||| | || || || |||||||||| Sbjct 600 GGCGCACTTACCGACGAGGACACCGAAATCATCTGGATCGCCTTCGGGAACCCGACGCAG 659 Query 1314 AACACTGGGCGTTTCCGTGAATGTTTCCGCAAATACAAACACCGCTGGAAGTG-CGCG-C 1371 ||| || || ||||| || || |||||| ||| |||| |||| ||| |||| | Sbjct 660 TCCACAGGCCGCTTCCGCGAGTGCTTCCGCCGGTACCGCCACCTCTGG--GTGACGCGCC 717 Query 1372 AGATTGACAGCCGCACCGTGGAAGGCACCAACAAGCAGCAACTGCAAAAGTGGGTGGACG 1431 | || |||||||||||||| || ||||| ||||||||| | ||| | ||| |||| || Sbjct 718 ACATCGACAGCCGCACCGTCGAGGGCACGAACAAGCAGTACCTGGACGAGTTCGTGG-CG 776 Query 1432 AC-TACGGCGAAGACAGCGACTTCGTGAAGGTTCGCGTGCGCGGGATCTTCCC 1483 || ||||||| ||||||||| |||| ||||| ||||||||||| | ||||| Sbjct 777 ACGCACGGCGAGGACAGCGACATCGTCAAGGTCCGCGTGCGCGGCCTGTTCCC 829 >seq30077 Length=415 Score = 84.2 bits (92), Expect = 5e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2824 GCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2882 |||||| ||||||||||| ||| ||||||||||||||| ||||||||||| |||||||| Sbjct 338 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120615702642252