Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq58141 102 2e-17 seq835595 84.2 7e-12 seq30077 84.2 7e-12 seq51269 82.4 2e-11 >seq58141 Length=7631 Score = 102 bits (112), Expect = 2e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 24500 ATCAAGTCGAAGGCGCGCATCCTCATCGCTTGGGTCGATGAGGCCGAGAACGTCAGCGAG 24559 |||||||||||| || | ||||| |||||||| ||||| || |||||||||||| Sbjct 3630 ATCAAGTCGAAGTTCGGCTACAACATCGTCTGGGTCGAGGAGGCGGAAAACGTCAGCGAG 3571 Query 24560 ATCGCCTGGCAGAAGCTGCTGCCGACGGTCCGCGAGTGCGACTCCGAAGTCTGGATCACC 24619 | | |||| || |||| | ||||| |||||||| |||||||||| ||||||||| | Sbjct 3570 AACAGCTGGAAGGTGCTGATCCCGACCATCCGCGAGGCCGACTCCGAAATCTGGATCAGC 3511 Query 24620 TGGAACCCG 24628 | |||||| Sbjct 3510 TTCAACCCG 3502 >seq835595 Length=206 Score = 84.2 bits (92), Expect = 7e-12 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 21329 TCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTG 21388 || ||||||||||| ||||| | || || ||||| || || | ||||| ||| | Sbjct 73 TCTCAGCTCAACCGTAGTCTGGAAAATCGTCCCAACAAACGTCCTGTCATGTCTGACTTA 132 Query 21389 CGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAG 21448 || || || || |||||||| || || |||||| |||||||||| | || || || ||| Sbjct 133 CGTGAATCGGGTGCGATCGAACAAGATGCCGATTTGATCATGTTTATCTATCGGGATGAG 192 Query 21449 GTCTAC 21454 |||||| Sbjct 193 GTCTAC 198 >seq30077 Length=415 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 135 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 77 >seq51269 Length=252 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 13621 GCTGGTAGATCTCGGAGCGGTGGATGGCGACGTCGTCCGGGGCGGTGATGCCGAGGCGCA 13680 |||| |||||||| ||| || | |||||||| | ||| ||||||||||||| |||| Sbjct 119 GCTGATAGATCTCTTCGCGATGCACAGCGACGTCCTTCGGCGCGGTGATGCCGATACGCA 178 Query 13681 CCTGGTCGCCTTGGCTGCTGAGGACCGTGACGGTGATGTTGTCGCCGATATGCAGGGTTT 13740 |||||| || | | || || || |||||| | | ||| ||||| |||||||| Sbjct 179 CCTGGTTACCCTTGACGCCAAGCACGGTGACGCTCACCGAGTCACCGATCATCAGGGTTT 238 Query 13741 CGCCGGGGCGGCG 13753 ||||| |||||| Sbjct 239 CGCCGACGCGGCG 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153233689194914