Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq980070 87.8 1e-12 >seq980070 Length=1613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || |||||||||| || || || | |||| ||||| || ||||| || ||||| Sbjct 428 TGGGCCATCATGTGGGTCAGCAGGGCGTAGGAAGCGATATTGAAGGGCACGCCGAGGAAG 487 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 ||||| | | |||||||||||| || || |||| |||||| |||||| ||||| Sbjct 488 ATGTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCTTGCCGTCGGCCACGTAGAACTGG 547 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 | | || |||||| || || || ||| | || ||| |||||||||| | Sbjct 548 AAGAAGGCGTGGCAGGGCGGCAGCTTCATCTGCGGCACGTCGGCCACGTTCCAGGCGGAG 607 Query 30061 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCA 30103 ||||| | ||| | || || ||||||||||| |||||| Sbjct 608 ACGATCAGGCGGCGCGAGTCCGGATTGTTCCTGATCTGGTCCA 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398269596916673