Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq7353 145 2e-30 seq138243 140 1e-28 seq18368 136 1e-27 >seq7353 Length=217 Score = 145 bits (160), Expect = 2e-30 Identities = 136/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013 |||||||| || | || |||||| |||||||||||||| |||| | |||||| ||| Sbjct 183 TGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTT 124 Query 26014 TCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTAC 26073 ||||||| |||||||| ||| | || || ||||| ||||| |||||||| ||||||| Sbjct 123 TCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTAC 64 Query 26074 TCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 || || |||||||| || |||||||| |||| | || || |||||||| || Sbjct 63 TCACCAGCGATCTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGT 11 >seq138243 Length=1642 Score = 140 bits (154), Expect = 1e-28 Identities = 214/305 (70%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 25981 ATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCC---ACTTGCGGGTTTTCAGTTGC 26037 || || |||| |||||| || | ||||||||| || |||||||||| | ||| | Sbjct 142 ATGTCGGTGGCGTAGCGTTCGATGCCGTCCTTGTCGGTGTACTTGCGGGTCTGCAGGCGG 201 Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 || || | ||| ||| ||||||||||||||||||| ||| |||| || || | | Sbjct 202 CCTTCGACGTAGACCGAGGAACCTTTCTTCAGGTACTGGCCGACGATTTCAGCGAGACGG 261 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 || || | || ||| |||||||| |||| |||||||| |||||||| | || Sbjct 262 CCGAAGAAGGAGATGCGGTGCCATTCGGTCAGTTCTTTCTGCTCGCCGGTGTTGCGGTCC 321 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 || | | | ||||| || || | |||||||||| ||| |||| | |||||||| Sbjct 322 TTGGATTTGTACGAGGTGGCCACTGCGATGTTGGCGATGGCGTCGCCGCTCGGCATGTAG 381 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGAT 26277 ||||| || |||||| || ||||| ||||| | ||| || || || || |||| Sbjct 382 CGGATTTCCGGATCGCGGCCGAGGTTGCCGACGATGATGACCTTGTTGAC------TGAT 435 Query 26278 GCCAT 26282 ||||| Sbjct 436 GCCAT 440 >seq18368 Length=1007 Score = 136 bits (150), Expect = 1e-27 Identities = 204/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 25978 ACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTTCAGTTGC 26037 ||||| || ||| |||| ||| |||||| || ||||| | ||||||||||| | Sbjct 461 ACAATCTCGGTGCTGTATTGCTTCTGGCCGTCTTTCTCCCATTGACGGGTTTTCAGACGA 402 Query 26038 CCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTG 26097 ||||| ||||| ||| || || |||||||| |||||||| ||||| ||||| | Sbjct 401 CCCTCGATGTAGACCGACGATCCCTTCTTCAGATACTCGCCAGCGATTTCCGCCAAGCGA 342 Query 26098 CCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCG 26157 || || | | ||| |||||||||||| || |||| | | || ||| | ||| || Sbjct 341 CCGAAGAACGCGATGCGATGCCATTCGGTGGCTTCGCGCATCTCACCGCTACCCTTGTCC 282 Query 26158 TTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAA 26217 || ||| || | ||| || ||| ||||||| ||| ||| ||||| | ||||||||| Sbjct 281 TTAAAGCGATCGGTGGTTGCCACGCGGATGTTGGTGACCGCGTCGCCACTGGGCATGTAA 222 Query 26218 CGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTAC 26267 || | || ||||| || ||||| || || | ||| || || || || Sbjct 221 CGTGTTTCCGGATCAGCACCGAGGTTGCCCACGATGATGACCTTGTTGAC 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155874088833566