Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq1975374 87.8 5e-13 >seq1975374 Length=208 Score = 87.8 bits (96), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 48749 GAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAA 48808 || |||||||| | | ||| ||||||||||| |||| || || |||||| | Sbjct 205 GATTGGTTCGGCGACGTGCCGGCCTTCATCATCACCTTGGCTGCTGACTACTGCGCCGCC 146 Query 48809 TGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCC 48868 || ||| || |||||||| ||||| ||||| ||| | | |||||||| |||||| Sbjct 145 TGTTCCGACGCTGACTTCTGCGCGCTGGTGGAGCACGAGTTATTTCACATCGCTCAGGCC 86 Query 48869 ACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTG 48928 | ||| | | ||| || || ||||||| | |||| || | || |||| || Sbjct 85 AAGGATCAATACGGCGCTCCCAAGTTCACCCAAGA---AGGACTGCCCAAGCTTGAGATG 29 Query 48929 CGCGGCCACGACGTCGAAGAATTC 48952 ||||| |||||||| ||||| ||| Sbjct 28 CGCGGACACGACGTTGAAGAGTTC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153174389439436