Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq18368 237 6e-58 seq138243 226 1e-54 seq18855 107 7e-19 >seq18368 Length=1007 Score = 237 bits (262), Expect = 6e-58 Identities = 252/332 (76%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 9964 ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGC 10023 ||||| || |||||||| |||||| |||| ||||| ||||| || || |||||||| || Sbjct 163 ATGGCTTCAGTCAACAAGGTCATCATCGTGGGCAACCTCGGTGCTGATCCGGAAACACGT 222 Query 10024 TACCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAG 10083 ||| | || || |||||||| || ||||||||||| | || || |||||||||| ||| Sbjct 223 TACATGCCCAGTGGCGACGCGGTCACCAACATCCGCGTGGCAACCACCGATCGCTTTAAG 282 Query 10084 GACAAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGC 10143 ||||||| ||||| |||||| ||| | ||||||||||| ||| || |||||||| Sbjct 283 GACAAGGGTAGCGGTGAGATGCGCGAAGCCACCGAATGGCATCGCATCGCGTTCTTCGGT 342 Query 10144 CGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGC 10203 ||| | || || |||| | |||||| ||| ||||| || |||||||||||||||| Sbjct 343 CGCTTGGCGGAAATCGCTGGCGAGTATCTGAAGAAGGGATCGTCGGTCTACATCGAGGGT 402 Query 10204 CGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATC 10263 || | || || | || ||| || | ||||||| | | |||| |||||||| Sbjct 403 CGTCTGAAAACCCGTCAATG---GGAGAAAGACGGCCAGAAGCAATACAGCACCGAGATT 459 Query 10264 GTCGCCGAGAAGATGCAGATGCTCGGCGACCG 10295 ||||| ||| ||||||||||||| |||| ||| Sbjct 460 GTCGCGGAGCAGATGCAGATGCTTGGCGGCCG 491 >seq138243 Length=1642 Score = 226 bits (250), Expect = 1e-54 Identities = 251/335 (75%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 9963 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 10022 ||||||||| |||||||| |||||| |||||||||| |||||| ||| ||||||| ||| Sbjct 441 CATGGCATCAGTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCG 382 Query 10023 CTACCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAA 10082 |||| | |||||||||||||| ||| |||||||| | || || | | | ||| Sbjct 381 CTACATGCCGAGCGGCGACGCCATCGCCAACATCGCAGTGGCCACCTCGTACAAATCCAA 322 Query 10083 GGACAAGGCGAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGG 10142 |||| | ||||||| ||| ||| |||||||||||||||| || ||||||||| Sbjct 321 GGACCGCAACACCGGCGAGCAGAAAGAACTGACCGAATGGCACCGCATCTCCTTCTTCGG 262 Query 10143 CCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGG 10202 ||| ||||| || ||||||| | |||||||| || || | |||||||| |||| || Sbjct 261 CCGTCTCGCTGAAATCGTCGGCCAGTACCTGAAGAAAGGTTCCTCGGTCTACGTCGAAGG 202 Query 10203 CCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGAT 10262 |||| | | || || |||| || || | |||| || |||||| | ||||| || Sbjct 201 CCGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCATCGAACGCTACGCCACCGACAT 142 Query 10263 CGTCGCCGAGAAGATGCAGATGCTCGGCGACCGCC 10297 | |||| || || ||||||||||| |||| ||||| Sbjct 141 CATCGCTGAAAACATGCAGATGCTGGGCGGCCGCC 107 >seq18855 Length=767 Score = 107 bits (118), Expect = 7e-19 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 18041 GATCACGCCGAAGCAGCAGGCATTCGTCGACGAATATCTGATCGACCTGAACGCCACGAA 18100 |||||| |||| ||||| |||||||| ||||| ||| | ||||||||||| || || Sbjct 528 GATCACCGCGAAAAAGCAGCTCTTCGTCGATGAATACCTGGTTGACCTGAACGCAACCAA 587 Query 18101 GGCCGCGATCCGCGCCGGCTACAGCCCCAAGACGGCACA 18139 ||| |||||||| |||||||||||| ||||||||||||| Sbjct 588 GGCTGCGATCCGTGCCGGCTACAGCGCCAAGACGGCACA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192908346649458