Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq839203 118 8e-22 seq138792 109 4e-19 seq218242 104 2e-17 seq1978033 98.7 8e-16 seq362679 98.7 8e-16 seq1991079 91.5 1e-13 seq221428 91.5 1e-13 >seq839203 Length=7618 Score = 118 bits (130), Expect = 8e-22 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||||| ||||| || || ||||| || || ||||||||||| | || | |||| || Sbjct 928 AACTAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGGCTAGGGTGCGACCATCCTC 987 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||| || ||||| ||||| |||||||| || || || ||||| || || || || Sbjct 988 AAGTTGCTTGCCAGCAAAGATCAACCGCTGTTGGTCCGG-GGGATGCCCTCCTTGTCCTG 1046 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 || || ||| ||| | || | ||||| || | || || |||||||||| || || Sbjct 1047 GATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTT 1106 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||| | || || || || |||||||| Sbjct 1107 GCCGGTGAGGGTCTTCACGAAAATCTGCAT 1136 >seq138792 Length=3226 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || ||||| || || | || | | |||| || Sbjct 287 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGGCCATCCTCA 228 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || | |||||| || || || ||||||||||| || || || Sbjct 227 AGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 168 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | ||||| || | ||||| || | |||| || ||| Sbjct 167 ATCTTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCCAATGTGATGGTCTTG 108 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || |||||||| || |||||| Sbjct 107 CCCGTGAGGGTCTTTACAAAGATTTGCATG 78 >seq218242 Length=2478 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || || ||||| || || | || ||| |||| || | ||| Sbjct 1444 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCAAGCTGC 1385 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| || || || ||||||||||| || || || || || Sbjct 1384 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTG 1325 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | |||||| || || |||| || ||||| || Sbjct 1324 GCCTTAACGTTGTCGATGGTGTCGGATGATTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1265 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 || || || || || ||||||||| | | ||||| Sbjct 1264 AACGTCTTGACGAAGATCTGCATGCCTCCACGAAG 1230 >seq1978033 Length=13150 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || || ||||| || || || || |||||||| || | ||| | |||| || Sbjct 5491 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTGCGACCATCCTCA 5432 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||||||||| |||| ||||| || || || || ||||| || || || || Sbjct 5431 AGCTGCTTACCTGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 5372 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | |||||| || || |||| || ||| Sbjct 5371 ATCTTAGCCTTCACATTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTGATGGTCTTG 5312 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || || ||||| Sbjct 5311 CCAGTAAGGGTCTTGACGAAGATTTGCAT 5283 >seq362679 Length=1828 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || || | || | | |||| || | ||| Sbjct 1726 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCTTCGAGCTGC 1667 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| || || |||| |||||| || || || || ||||| || || || || || || Sbjct 1666 TTACCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1607 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || |||| || |||||||| Sbjct 1606 GCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1547 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||| || ||||||||||||||| Sbjct 1546 AGAGTCTTAACAAATATCTGCATG 1523 >seq1991079 Length=1418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || || || || || || || || | || | | |||| || Sbjct 1212 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCTAGGGTGCGGCCATCCTCA 1153 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| || | ||||| | || || ||| |||| || || || || Sbjct 1152 AGCTGCTTACCAGCAAAGATGAGGCGCTGCTAGTCCGGGGGA-TGCCCTCCTTGTCCTGG 1094 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | |||| |||||||| | ||||| || | |||| || ||| Sbjct 1093 ATCTTCGCCTTCACGTTGTCTATGGTGTCAGATGACTCCACCTCCATGGTGATAGTCTTG 1034 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || ||||||||||||||| Sbjct 1033 CCGGTGAGGGTCTTCACAAATATCTGCATG 1004 >seq221428 Length=956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||||||||| || || |||| || | || | |||| |||| || Sbjct 305 ATGCAGAGTGGATTCTTTTTGGATGTTATAATATGCCAAGGTACGCCCATCCTCCAGCTG 246 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 | | |||||||| || | | ||| ||||| || ||||| || || || || || || || Sbjct 245 CCTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGGATCTT 186 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||| || | |||||||||||||| | || || | || Sbjct 185 GGCCTTCACATTATCGATGGTGTAGGAGCTCTCCACTTCAAGAGTAATGGTCTTCCAAGT 126 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 ||| | | ||||||| ||||||||| Sbjct 125 TAATG-TCTTACAAAAATCTGCATG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 386242879980657