Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq123434 102 6e-17 seq839203 100 2e-16 seq138792 96.9 3e-15 seq1978033 91.5 1e-13 seq980325 91.5 1e-13 seq878454 91.5 1e-13 seq138594 91.5 1e-13 seq102963 91.5 1e-13 seq139869 87.8 1e-12 seq948143 84.2 2e-11 seq694938 84.2 2e-11 seq218242 84.2 2e-11 seq1989185 82.4 6e-11 >seq123434 Length=6912 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||||||| ||||| |||||| ||||| |||||||||| | Sbjct 4084 CCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 4143 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | |||| | || ||||||||||| || ||||| || || | || || || | |||| Sbjct 4144 AATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGA 4203 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 4204 ATGCCCTCCTTGTC 4217 >seq839203 Length=7618 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| |||||||| | ||| | || Sbjct 692 AGGCGGAGCACCAAGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGCAAGAGTACGG 751 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | ||||| | |||||||||||| || ||||| ||||| || |||| ||| | ||||||| Sbjct 752 CCATCGTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 811 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | ||||| | |||||||||| || Sbjct 812 TTGTCCTGGATCTTTGCCTTCACGTTGTGAATGGTGTCTGAAGATTCCACCTCCAAGGTG 871 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || ||||||||||| Sbjct 872 ATTGTCTTGCCAGTAAGGGTCTTGACGAAAATCTGCAT 909 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || |||||||| | ||| | ||| | || || | ||| Sbjct 935 TGAAGAGTGGACTCTTTCTGGATGTTGTAATCGGCTAGGGTGCGACCATCCTCAAGTTGC 994 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| |||||||| |||| |||| |||||||||||| ||||| Sbjct 995 TTGCCAGCAAAGATCAACCGCTGTTGGTCCGGGGGAT-GCCCTCCTTGTCCTGGATCTTC 1053 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | || || | ||| ||||| | || || || || || || Sbjct 1054 GCTTTGACATTGTCGATCGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCGGTG 1113 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || || |||||||||||| Sbjct 1114 AGGGTCTTCACGAAAATCTGCATC 1137 >seq138792 Length=3226 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || ||||| ||||| || | | | || Sbjct 296 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGG 237 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| || || ||||| || |||| ||||| ||| ||| Sbjct 236 CCATCCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCC 177 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||||| || Sbjct 176 TTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCCAATGTG 117 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | || |||||||| || ||||| Sbjct 116 ATGGTCTTGCCCGTGAGGGTCTTTACAAAGATTTGCAT 79 >seq1978033 Length=13150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| |||||||| | ||| | ||| Sbjct 5500 AGGCGGAGCACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTGCGA 5441 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| ||||| ||||| || |||| ||| | ||||||| Sbjct 5440 CCATCCTCAAGCTGCTTACCTGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 5381 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | |||||||||| || Sbjct 5380 TTGTCCTGGATCTTAGCCTTCACATTGTCAATGGTGTCCGAAGATTCCACCTCCAGGGTG 5321 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || || || ||||| Sbjct 5320 ATGGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCAT 5283 >seq980325 Length=977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| || | || | ||| Sbjct 760 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGA 819 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||||| ||||| ||||||| Sbjct 820 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCC 879 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||||| || Sbjct 880 TTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAGAGTG 939 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || || || |||||||| Sbjct 940 ATGGTCTTCCCAGTCAGGGTCTTGACGAAGATCTGCAT 977 >seq878454 Length=5435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || |||||||| | || | || Sbjct 1051 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGG 992 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| |||||||| || |||||||| || |||| ||| | ||||||| Sbjct 991 CCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCC 932 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 931 TTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTG 872 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || ||||||||||| Sbjct 871 ATGGTCTTGCCTGTGAGGGTCTTCACGAAAATCTGCAT 834 >seq138594 Length=2879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 23 CGCCACCGCGGAGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 82 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || |||| | Sbjct 83 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 142 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || |||| ||||| Sbjct 143 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCCA 202 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 203 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 255 >seq102963 Length=6263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 3516 CGCCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3457 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||||||||| || || || ||||| || |||| | Sbjct 3456 CGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 3397 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 3396 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCA 3337 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 3336 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 3284 >seq139869 Length=4701 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || || || ||||| || | || | || Sbjct 990 AGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGG 931 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||||||| || |||| ||||| || || | ||| | ||||||| Sbjct 930 CCATCCTCAAGCTGCTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCCTCC 871 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || || | | | || || | ||| ||||||| || Sbjct 870 TTGTCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTG 811 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||||||||| Sbjct 810 ATGGTCTTCCCGGTGAGGGTCTTGACAAAAATCTGCAT 773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | |||||| || || ||| || || || || |||||||| | || | || Sbjct 762 AGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGG 703 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||| ||||| || |||| ||| | ||||||| Sbjct 702 CCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 643 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || | ||| ||||||| || Sbjct 642 TTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGACTCAACCTCCAAGGTG 583 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || || || |||||||| Sbjct 582 ATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 545 >seq948143 Length=1505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || ||||| ||||| || | || | || Sbjct 323 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTGCGG 264 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| || |||| ||| | ||||||| Sbjct 263 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 204 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || |||| ||||||||| | || Sbjct 203 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCCACCTCAAGAGTG 144 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | || || || || ||||||||| Sbjct 143 ATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATC 105 >seq694938 Length=221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||||| || || ||| ||| || || || ||||| |||| Sbjct 40 CCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 99 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || |||| |||| || | |||||| || ||||| || || ||||| || |||| ||| Sbjct 100 AGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 159 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 160 ATGCCCTCCTTGTC 173 >seq218242 Length=2478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| |||| || | | | || || | |||| Sbjct 1216 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCGAGCTGC 1157 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||| || |||| || | |||||||||||| ||||| Sbjct 1156 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1097 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || |||| ||||||||| | || || || ||||| ||| Sbjct 1096 GACTTGACATTGTCGATTGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTTCCAGTC 1037 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||| ||||||||| Sbjct 1036 AATGTCTTCACAAAGATCTGCATC 1013 >seq1989185 Length=2918 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || ||| ||| || || || |||||||||| ||| | || Sbjct 2764 AGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGG 2823 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| || || ||||| || |||| ||| | ||||||| Sbjct 2824 CCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 2883 Query 48669 TTGTC 48673 ||||| Sbjct 2884 TTGTC 2888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 371290576819023