Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq71034 511 6e-140 seq56478 154 2e-32 seq28963 111 2e-19 seq32071 93.3 6e-14 >seq71034 Length=3563 Score = 511 bits (566), Expect = 6e-140 Identities = 752/1047 (72%), Gaps = 42/1047 (4%) Strand=Plus/Minus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 ||||| ||||| | ||| ||||| || ||||| || | || || ||||| |||| ||| Sbjct 2667 CCCTTTACGCACACGACCTGCTTCAGCGTGTGCACCACTTCGACCAGGTCGCTCTGCGCC 2608 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 136767 | ||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 2607 TGCATCACGGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATCACGCCTTCGTCC 2548 Query 136768 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTT 136826 ||||||||||| ||||| ||||| ||||||| |||||| || | | || | || ||| Sbjct 2547 TTGCGGCACTCGACGCCTTCGGTCGCCTTGACCTGGTCGTCGACCGAATAGCGGCG-CTT 2489 Query 136827 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 136886 ||| | ||| || ||| || ||||| |||||||| ||| | ||| || || Sbjct 2488 GGCTTCGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCAGCTGTTGAAACTCTCGGC 2429 Query 136887 ATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 136946 ||||||||||||||||||||| || ||| ||||||||||| || || ||||| |||| Sbjct 2428 ATTGCCCTTGCCGCGCACGATATAACTCTTCGCCCCCATCGATCCCGGAATGATGCCGAG 2369 Query 136947 CTGGTCCTTC-TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGT 137005 || ||||| ||||||| |||||||||||||| ||||| | || || | |||||| Sbjct 2368 CT-CCCCTTCGCGCGCCGATACCGCGCCCTTGCGCGTCACCAGCACATCCTTGCCGAAGT 2310 Query 137006 GGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACG 137065 || |||||||| |||||||||||||||||||||||||||||| || |||| ||| | Sbjct 2309 GGTGCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCTTCCACGTGGGTCTCGAAGG 2250 Query 137066 GCGGCAGGCCCGACGCCCGCATGGCCTC---CAGGACCCGGACCATCATCATCTCGCGGT 137122 | | | | || |||| ||| | |||| ||| |||||||| || |||| Sbjct 2249 GTTTCGCGATCACCGTGCGCACCGCCGCGATCAGGTTCCG---CATCATCACTTCACGGT 2193 Query 137123 TGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCT 137182 | || || ||||| | |||| ||||| |||| ||||| | ||||||| | | | | || Sbjct 2192 TCATGCGGGCGAACTTCTGGGCCCAGCCGACCGCTTCGATATAGTCGTCGTAGTGCTGCG 2133 Query 137183 CGCCTTC--GCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGCAG 137240 || || ||||| | || ||||||| |||| | | ||| || | | | Sbjct 2132 TTCCCTCCGGCAGA--TAGGCCAGGTCCTGGTCCGGAAGGTTGATGAAGT---GGGTCCG 2078 Query 137241 CATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGA 137300 ||| || |||||||| |||||||||| | |||||| | ||||||||||||||||| Sbjct 2077 CATGTCCTGCTTGGCCTGCTCGATGAAGTGGGTGCCGATCGCATTGCCGACGCCGCGCGA 2018 Query 137301 GCCCGAGTGGAGCATCACCCAGAC---GCGCTGGTCCTCGTCGAGGCAGACCTCGATGAA 137357 ||||||||| ||||| | |||||| || ||| |||||||||||||| ||||||||| Sbjct 2017 GCCCGAGTGCAGCATGAACCAGACGAAGCCCTG---CTCGTCGAGGCAGATCTCGATGAA 1961 Query 137358 GTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGG 137417 |||||| ||| ||||| || ||||| || | |||| | ||| |||| ||| Sbjct 1960 GTGGTTACCGGTTCCCAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTGCGCAGCCGCGG 1901 Query 137418 GTACTTCTCGCAGAGCTTGTCGAA---------CCGCGCC-TCCAGGCCCGAATCGAC-- 137465 ||||| ||||| |||||| | ||||| |||||| ||| ||||| Sbjct 1900 CGTCTTCTGGCAGATGAGGTCGAATTCGTCCTTCAGCGCCATCCAGG-CCGTGTCGACGG 1842 Query 137466 CCACTTGCGCAGGAT-CGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGAC 137524 | | ||| | || | | | || | ||| || || |||||| || | Sbjct 1841 CTGGTGGCGGCGCATCCCACGAGCCCTTGTC---GCGTCCCTTGAAGCCGCGCGTCTTGG 1785 Query 137525 CCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGAAGCTTGGACAGGCTGTCG 137583 || | |||||||| || | | |||||||| ||| ||| ||| |||| |||| Sbjct 1784 GCGACATCCCGTGCGGCACCGAGCGCTCGATC-GCGCTGCGCAGCGGCCCCAGGTTGTCC 1726 Query 137584 GGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACG 137643 || ||||| || ||| || | || | | | |||||||||||||||||||||||||| Sbjct 1725 GGCAGGTCGGATGCGCCCAAGGTGCTCTTGGCGGCCATCATGCCGCAGCCGATGTCGACC 1666 Query 137644 CCGACGGCGGCCGGGATGATCGCGCCC 137670 ||||| |||||||| |||||||||||| Sbjct 1665 CCGACCGCGGCCGGAATGATCGCGCCC 1639 >seq56478 Length=247 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 136842 CATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCG 136901 |||||| ||||| |||||||| ||| | ||| |||| ||| || || || || Sbjct 17 CATCGTGCGGCCGGCGCCGTGGCTGCAGCTGTGGAAGCTCTCCGGATTCCCTTTACCACG 76 Query 136902 CACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGC 136961 ||||||| || ||| || |||||||| || || ||||| || | || | ||| |||| Sbjct 77 CACGATGAAGCTCTTCGCGCCCATCGAACCCGGAATGATACCCAGCTCGCCCTCGCGCGC 136 Query 136962 CGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGAC 137021 ||||| ||||||||||| ||||| | || || | |||||||| ||||||||| || Sbjct 137 GGACACGGCGCCCTTGCGCGTCACCAGCACGTCCTTGCCGAAGTGGTGTTCCTTCTGCAC 196 Query 137022 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 137066 ||||||||| ||||||||||| |||||| || ||| | |||||| Sbjct 197 GTAGTTGTGATGGCAGTTCACTGCTTCCACGTGCGTTTCGAACGG 241 >seq28963 Length=574 Score = 111 bits (122), Expect = 2e-19 Identities = 175/247 (71%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 95208 TAGATCATGGCGTAGATGAAGGTCTTGGCGGTGTCGCGCGACTCCATCTCCATG--GCCG 95265 |||| | |||||||||||||||||||||| ||||||| | || ||| || |||| Sbjct 2 TAGAGGAAGGCGTAGATGAAGGTCTTGGCGTTGTCGCGGGTTGGCAG-TCC-TGCCGCCG 59 Query 95266 CTTGGTGGACGCCGTGGACGTCGCCGTCGAGCACGATCTTGCCGTACTGCCCGTTGTCGA 95325 ||||| |||| ||||| |||||| ||||| | || |||| |||||| ||| |||| Sbjct 60 ATTGGTTGACGGAGTGGATGTCGCCTTCGAGGATGACCTTGGCGTACTCGCCGCCGTCGT 119 Query 95326 ACTCCGCCATGAAGTGGGCCAGACAGCGCAGTTCGATACCGGCTTGGTCGGCGCCCATCA 95385 || ||||||||||| ||||| |||||||| || | || | ||| ||||| | | Sbjct 120 GCTTTGCCATGAAGTGCGCCAGGCAGCGCAGCTCCAATCCCGAGGCGTCCGCGCCGACCT 179 Query 95386 GGGTCCAGCCCTCGGGGACGTAGAAGAGGTCGCGGCAGTCCCAGCCGTGATCGCCCTCGC 95445 || | || |||||| |||| | |||||| || | |||| |||| || Sbjct 180 GGAGCTTCCCTGTTGGGACGCAGAACAACGAGCGGCACTCGAATCCGTAGCCGCCTTCCT 239 Query 95446 GGCCCTT 95452 ||||||| Sbjct 240 GGCCCTT 246 >seq32071 Length=271 Score = 93.3 bits (102), Expect = 6e-14 Identities = 188/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 136675 GTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAG 136734 ||||| || | ||| || ||||| ||| || |||| || ||||||| |||||| Sbjct 1 GTGTGCACCACGTCGACCAGGTCGAGCTGCGCGGCCATCACATCGTCGATCGACTTGTAC 60 Query 136735 GCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCC 136794 || ||| |||||| | |||||| |||||||||||| |||||| | |||||||| Sbjct 61 GCGGCCGGTGATTCGTCCAGCACGCCGCTGTCCTTGCGGCATTCCACGTGCGCGGTGGCC 120 Query 136795 TTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG-GCCTGGGTCCGCG--ACATCGTCCGG 136851 | | || | |||| |||| || || | || || || || |||| |||| Sbjct 121 TCGCGGTGCTGGGCCAGCGTGA---TCTGCTGGCGCGCGGCGCCACGGCTCATCACCCGG 177 Query 136852 CCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAG 136911 || || ||||| ||| | ||| |||||| ||||| |||||||||||||||||| Sbjct 178 CCGGCACCGTGGCTGCAGCTGTGGAAGCTGTCCGCGTTGCCTTTGCCGCGCACGATGTAG 237 Query 136912 GACTTGGC--CCCCATCGAGCCGGGGATGATCCC 136943 || || ||||| |||||| ||||| || Sbjct 238 --CTGCGCGTGCCCATGCTGCCGGGAATGATGCC 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 672218363653200