Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq71034 426 3e-114 seq56478 178 2e-39 seq32071 104 4e-17 seq894704 95.1 2e-14 seq200436 95.1 2e-14 seq20050 95.1 2e-14 >seq71034 Length=3563 Score = 426 bits (472), Expect = 3e-114 Identities = 782/1140 (69%), Gaps = 43/1140 (4%) Strand=Plus/Minus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||| ||||||| |||||||| || ||| || | || |||| || ||| ||| Sbjct 2667 CCCTTTACGCACACGACCTGCTTCAGCGTGTGCACCACTTCGACCAGGTCGCTCTGCGCC 2608 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||| ||| ||||| |||||| ||| |||| ||||||||||||||||||||||| Sbjct 2607 TGCATCACGGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATCACGCCTTCGTCC 2548 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 ||||||||||||||||| | || || | ||| || ||||| | || | | ||| Sbjct 2547 TTGCGGCACTCGACGCCTTCGGTCGCCTTGACCTGGTCGTCGACCGAATAGCGGCGCTTG 2488 Query 168453 GCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCAGCG 168512 || | | || |||| ||||||||||||||||||||| | ||| || || Sbjct 2487 GCTTCGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCAGCTGTTGAAACTCTCGGCA 2428 Query 168513 TGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGT 168572 | |||||||||||||||||| | ||| || |||||||| ||||||||||||||||| Sbjct 2427 TTGCCCTTGCCGCGCACGATATAACTCTTCGCCCCCATCGATCCCGGAATGATGCCGAGC 2368 Query 168573 TCGTCCTTCT-GCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTG 168631 || ||||| ||||||| |||||||||||||| ||||| | | |||| ||||||||| Sbjct 2367 TCC-CCTTCGCGCGCCGATACCGCGCCCTTGCGCGTCACCAGCACATCCTTGCCGAAGTG 2309 Query 168632 GCGTTCCTTGTTGACGTAGTTGTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAACGC 168691 | | ||||| | |||||||||||||| ||||||||||||||| || ||||| ||| | Sbjct 2308 GTGCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCTTCCACGTGGGTCTCGAAGGG 2249 Query 168692 CGGCACGAACTCC---CGGATCGCCTTGAGCACGCGGACCATCATCATGTCGCGGTTCAG 168748 | ||| | || || | |||| || || | |||||||| || ||||||| Sbjct 2248 TTTCGCGATCACCGTGCGCACCGCCGCGATCAGGTTCCGCATCATCACTTCACGGTTCAT 2189 Query 168749 GCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTCGTCGAAATCCTGCTCGCC 168808 ||| ||||| | || |||||||| || |||||||| ||||||||| | | |||| || Sbjct 2188 GCGGGCGAACTTCTGGGCCCAGCCGACCGCTTCGATATAGTCGTCGTAGTGCTGCGTTCC 2129 Query 168809 CACTTCGAGCCACGCGAGGTTCTCGTCCTGCGGGCGCACATGGCGCTTTGCCAGGGCGTT 168868 | | || | || |||| || |||| | || | | | | || | | | Sbjct 2128 CTCCGGCAGATAGGCCAGGTCCTGGTCCGGAAGGTTGATGAAGTGGGTCCGCATGTCCTG 2069 Query 168869 CTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCCGACGCCGCGCGATCCCGAGTG 168928 ||| |||| ||||||||||| | |||||||| | ||||||||||||||||| |||||||| Sbjct 2068 CTTGGCCTGCTCGATGAAGTGGGTGCCGATCGCATTGCCGACGCCGCGCGAGCCCGAGTG 2009 Query 168929 CAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATCGGTCTGGATGCAGATTTCGAT 168988 |||||| | ||| ||| ||||| ||| | || |||||| ||||| Sbjct 2008 CAGCATGAACCAGACG------------AAGCCCTGCTCG---TCGAGGCAGATCTCGAT 1964 Query 168989 GAAGTGGTTGCCGCCACCCAGCGACCCGAGTTGGGTCACGTTGTTCGACGTCTCCAAGAT 169048 ||||||||| ||| ||||||| || || || | |||||||| | || Sbjct 1963 GAAGTGGTTACCGGTTCCCAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTGCGCAGCCG 1904 Query 169049 CGGATGCTTTTCGCACAGCTTCTTGAACCGCGCCTCCAGCCCAGAATCGATCCAGGC--- 169105 ||| ||| | ||| | | ||| ||| |||| | |||||||| Sbjct 1903 CGGCGTCTTCTGGCAGATGAGGTCGAATTCGTCCTTCAGC------GCCATCCAGGCCGT 1850 Query 169106 ----ACGCATGATAGAGTTCGGGATGCCATGACGACCCGGT-TCCTGCCACGAACCCTTC 169160 ||| || | | | | || ||| || | || || | | || ||| || | Sbjct 1849 GTCGACGGCTGGTGGCG--GCGCATCCCACGA-GCCCTTGTCGCGTCCCTTGAAGCC-GC 1794 Query 169161 GCGCC-----CGGCCCGCCGTGCGGAACCGCACGTTCGATCGCCGAACGCATCGCCGCCA 169215 ||| | || | |||||||| |||| || |||||||| |||| || | ||| Sbjct 1793 GCGTCTTGGGCGACATCCCGTGCGGCACCGAGCGCTCGATCGCGCTGCGCAGCGGCCCCA 1734 Query 169216 AGTTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGA 169275 |||||||||||| | || || || ||| | | ||||||||||||||||||| Sbjct 1733 GGTTGTCCGGCAGGTCGGATGCGCCCAAGGTGCTCTTGGCGGCCATCATGCCGCAGCCGA 1674 Query 169276 TGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGG 169335 ||||||| ||||||||| ||| || | ||| || ||||||||||| || | || Sbjct 1673 TGTCGACCCCGACCGCGGCCGGAATGATCGCGCCCAGCGTCGGGATCACGCTGCCGATGG 1614 Query 169336 CTGCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTTGAACACGAACGGCA 169395 | || | || ||||||||||||||||| |||| | ||||||| | | ||| |||| Sbjct 1613 TCGATCCCTTGCCCACGTGGACGTCGGGCATCGCCGCCATGTGCTTGTAGATGAAGGGCA 1554 >seq56478 Length=247 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 168473 GCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCAGCGTGGCCCTTGCCGCGCACGAT 168532 ||||||||||||||||||||| | |||| || | | || || || |||||||| Sbjct 23 GCGGCCGGCGCCGTGGCTGCAGCTGTGGAAGCTCTCCGGATTCCCTTTACCACGCACGAT 82 Query 168533 GAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTCTGCGCCGACAC 168592 ||| ||| ||||||||||||||||||||||| || || ||| ||| |||| ||||| Sbjct 83 GAAGCTCTTCGCGCCCATCGAACCCGGAATGATACCCAGCTCGCCCTCGCGCGCGGACAC 142 Query 168593 CGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTCCTTGTTGACGTAGTT 168652 ||||||||||| ||||| | | ||||| |||||||||| ||||||| | |||||||| Sbjct 143 GGCGCCCTTGCGCGTCACCAGCACGTCCTTGCCGAAGTGGTGTTCCTTCTGCACGTAGTT 202 Query 168653 GTGGTGACAGTTCACCGCTTCCTTGTCGGTCTTGAACG 168690 ||| || |||||||| |||||| || || | ||||| Sbjct 203 GTGATGGCAGTTCACTGCTTCCACGTGCGTTTCGAACG 240 >seq32071 Length=271 Score = 104 bits (114), Expect = 4e-17 Identities = 171/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 168326 CTGGGCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCC 168385 ||| || ||||| || ||||||| |||||| || ||| | ||||| | |||||| Sbjct 27 CTGCGCGGCCATCACATCGTCGATCGACTTGTACGCGGCCGGTGATTCGTCCAGCACGCC 86 Query 168386 TTCGTCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAG 168445 |||||||||||| || ||| | ||||| ||| ||||| | |||| | || | Sbjct 87 GCTGTCCTTGCGGCATTCCACGTGCGCGGTGGCCTCGCGGTGCTGGGCCAGCGTGATCTG 146 Query 168446 CTTCTTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGC 168505 || ||| || ||| ||| || |||||||| ||||||||||| | |||| Sbjct 147 CTGGCGCGCGGCGCCACGGCTCATCACCCGGCCGGCACCGTGGCTGCAGCTGTGGAAGCT 206 Query 168506 GTCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGC--GCCCATCGAACCCGGAATG 168563 ||| |||| ||| ||||||||||||||| | || || |||||| || |||||| Sbjct 207 GTCCGCGTTGCCTTTGCCGCGCACGATGTA--GCTGCGCGTGCCCATGCTGCCGGGAATG 264 Query 168564 ATGCC 168568 ||||| Sbjct 265 ATGCC 269 >seq894704 Length=1652 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 172329 GACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATGATGCCGACGCC 172388 ||||||||| | |||||| | | |||||||||||||||||| | | |||||||| Sbjct 1522 GACGATCAGCAGCGGGAACAGCAGGCGCATGCCGAACACGGCCACCAGGATGCCGATCGT 1463 Query 172389 CAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAACGTGGGCGTTGACGACGGC 172448 |||||| || || | ||| ||| ||| || | || ||| ||| || || || || Sbjct 1462 CAGGAACAGTTTTTGCCAGAATGCGTTCCAGTTGCGCAGCACGGAGGCATTCACCACCGC 1403 Query 172449 GTTGTCGAACGACAGCGAGATTTCCAG 172475 ||||||||| |||||||||| ||| || Sbjct 1402 GTTGTCGAAGGACAGCGAGACTTCAAG 1376 >seq200436 Length=807 Score = 95.1 bits (104), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008 || ||| |||| |||||||||||||||| |||||||||| ||||||||||| |||| Sbjct 362 GCCCCAGCTTTGTCGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGG 303 Query 133009 TCGAGGGTTCAAATCCCTCCCCCGCATCCA 133038 ||| ||||||||||| |||||||| ||| Sbjct 302 TCGTCGGTTCAAATCCGGCCCCCGCAACCA 273 >seq20050 Length=1492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 171108 ACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACGGCGACGATGATC 171167 ||| | |||||||||||| ||| ||||||||||||| ||||||| || | |||| Sbjct 268 ACCTGGCCGAAGTTCTGGCGGCGCTGGTCGGCTTCGTGGATGGTCACGGAGAAGGCGATC 209 Query 171168 TCGTCGACGGCCGGGTTCAGCAGGCTGGTGTCGATGGTGATGCGCTCATCATCGCCAGCG 171227 | |||| |||| || | || || ||||| | |||||| || ||||| || Sbjct 208 TTTTCGATCTCCGGCGGCACCCGGGTGAGGTCGACCAGCAGGCGCTCGTCGTCGCCTTCG 149 Query 171228 CCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTCGGCGGACTTCAGGTTG 171287 || | |||||| |||||||||| | || || || ||||||| ||| | ||||||| Sbjct 148 CCCTGGCCGGTGCGGTTGTCGCCGGTATGCTTGACCGAACCGTCGGTGGATTGCAGGTTG 89 Query 171288 CCGTAGAACACGAAG 171302 |||||| | |||| Sbjct 88 TTGTAGAAGATGAAG 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 872499976270920