Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq71034 506 3e-138 seq56478 154 2e-32 seq28963 107 3e-18 seq32071 89.7 7e-13 >seq71034 Length=3563 Score = 506 bits (560), Expect = 3e-138 Identities = 753/1048 (72%), Gaps = 44/1048 (4%) Strand=Plus/Minus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||| ||||| | ||| ||||| || ||||| || | || || ||||| |||| ||| Sbjct 2667 CCCTTTACGCACACGACCTGCTTCAGCGTGTGCACCACTTCGACCAGGTCGCTCTGCGCC 2608 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCC 135527 | ||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 2607 TGCATCACGGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATCACGCCTTCGTCC 2548 Query 135528 TTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCCTT 135586 || |||||||| ||||| ||||| ||||||| |||||| || | | || | ||| || Sbjct 2547 TTGCGGCACTCGACGCCTTCGGTCGCCTTGACCTGGTCGTCGACCGAATAGCGGCGC-TT 2489 Query 135587 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 135646 ||| | ||| || ||| || ||||| |||||||| ||| | ||| || || Sbjct 2488 GGCTTCGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCAGCTGTTGAAACTCTCGGC 2429 Query 135647 ATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 135706 ||||||||||||||||||||| || ||| ||||||||||| || || ||||| |||| Sbjct 2428 ATTGCCCTTGCCGCGCACGATATAACTCTTCGCCCCCATCGATCCCGGAATGATGCCGAG 2369 Query 135707 CTGGTCCTTCT-GCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGT 135765 || ||||| ||||||| |||||||||||||| ||||| | || || | |||||| Sbjct 2368 CTCC-CCTTCGCGCGCCGATACCGCGCCCTTGCGCGTCACCAGCACATCCTTGCCGAAGT 2310 Query 135766 GGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACG 135825 || |||||||| |||||||||||||||||||||||||||||| || |||| ||| | Sbjct 2309 GGTGCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCTTCCACGTGGGTCTCGAAGG 2250 Query 135826 GCGGCAGGCCCGACGCCCGCATGGCCTC---CAGGACCCGGACCATCATCATCTCGCGGT 135882 | | | | || |||| ||| | |||| ||| |||||||| || |||| Sbjct 2249 GTTTCGCGATCACCGTGCGCACCGCCGCGATCAGGTTCCG---CATCATCACTTCACGGT 2193 Query 135883 TGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCC--GG 135940 | || || ||||| | |||| ||||| |||| ||||| | ||||||| | | | | | Sbjct 2192 TCATGCGGGCGAACTTCTGGGCCCAGCCGACCGCTTCGATATAGTCGTCGTAGTGCTGCG 2133 Query 135941 TTCGCCTTC-GCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCA 135999 ||| ||| | ||||| | || ||||||| |||| | | ||| || | | Sbjct 2132 TTC-CCTCCGGCAGA--TAGGCCAGGTCCTGGTCCGGAAGGTTGATGAAGT---GGGTCC 2079 Query 136000 GCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCG 136059 |||| || |||||||| |||||||||| |||||| | |||||||||||||||| Sbjct 2078 GCATGTCCTGCTTGGCCTGCTCGATGAAGTGGGTGCCGATCGCATTGCCGACGCCGCGCG 2019 Query 136060 AGCCCGAGTGGAGCATCACCCAGAC---GCGCTGGTCCTCGTCGAGGCAGACCTCGATGA 136116 |||||||||| ||||| | |||||| || ||| |||||||||||||| |||||||| Sbjct 2018 AGCCCGAGTGCAGCATGAACCAGACGAAGCCCTG---CTCGTCGAGGCAGATCTCGATGA 1962 Query 136117 AGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCG 136176 ||||||| ||| ||||| || ||||| || | |||| | ||| |||| || Sbjct 1961 AGTGGTTACCGGTTCCCAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTGCGCAGCCGCG 1902 Query 136177 GGTACTTCTCGCAGAGCTTGTCGAA---------CCGCGCC-TCCAGGCCCGAGTCGAC- 136225 | ||||| ||||| |||||| | ||||| |||||| ||| |||||| Sbjct 1901 GCGTCTTCTGGCAGATGAGGTCGAATTCGTCCTTCAGCGCCATCCAGG-CCGTGTCGACG 1843 Query 136226 -CCACTTGCGCAGGAT-CGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGA 136283 | | ||| | || | | | || | ||| || || |||||| || | Sbjct 1842 GCTGGTGGCGGCGCATCCCACGAGCCCTTGTC---GCGTCCCTTGAAGCCGCGCGTCTTG 1786 Query 136284 CCCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGAAGCTTGGACAGGCTGTC 136342 || | |||||||| || | | |||||||| ||| ||| ||| |||| |||| Sbjct 1785 GGCGACATCCCGTGCGGCACCGAGCGCTCGATC-GCGCTGCGCAGCGGCCCCAGGTTGTC 1727 Query 136343 GGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGAC 136402 || ||||| || ||| || | || | | | |||||||||||||||||||||||||| Sbjct 1726 CGGCAGGTCGGATGCGCCCAAGGTGCTCTTGGCGGCCATCATGCCGCAGCCGATGTCGAC 1667 Query 136403 GCCGACGGCGGCCGGGATGATCGCGCCC 136430 ||||| |||||||| |||||||||||| Sbjct 1666 CCCGACCGCGGCCGGAATGATCGCGCCC 1639 >seq56478 Length=247 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 135602 CATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCG 135661 |||||| ||||| |||||||| ||| | ||| |||| ||| || || || || Sbjct 17 CATCGTGCGGCCGGCGCCGTGGCTGCAGCTGTGGAAGCTCTCCGGATTCCCTTTACCACG 76 Query 135662 CACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGC 135721 ||||||| || ||| || |||||||| || || ||||| || | || | ||| |||| Sbjct 77 CACGATGAAGCTCTTCGCGCCCATCGAACCCGGAATGATACCCAGCTCGCCCTCGCGCGC 136 Query 135722 CGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGAC 135781 ||||| ||||||||||| ||||| | || || | |||||||| ||||||||| || Sbjct 137 GGACACGGCGCCCTTGCGCGTCACCAGCACGTCCTTGCCGAAGTGGTGTTCCTTCTGCAC 196 Query 135782 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 135826 ||||||||| ||||||||||| |||||| || ||| | |||||| Sbjct 197 GTAGTTGTGATGGCAGTTCACTGCTTCCACGTGCGTTTCGAACGG 241 >seq28963 Length=574 Score = 107 bits (118), Expect = 3e-18 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 93934 TAGATCATGGCGTAGATGAAGGTCTTGGCGGTGTCGCGCGACTCCATCTCCATG--GCCG 93991 |||| | |||||||||||||||||||||| ||||||| | || ||| || |||| Sbjct 2 TAGAGGAAGGCGTAGATGAAGGTCTTGGCGTTGTCGCGGGTTGGCAG-TCC-TGCCGCCG 59 Query 93992 CTTGGTGGACGCCGTGGACATCGCCATCGAGCACGATCTTGCCGTACTGCCCGTTGTCGA 94051 ||||| |||| ||||| ||||| ||||| | || |||| |||||| ||| |||| Sbjct 60 ATTGGTTGACGGAGTGGATGTCGCCTTCGAGGATGACCTTGGCGTACTCGCCGCCGTCGT 119 Query 94052 ACTCCGCCATGAAGTGGGCCAGACAGCGCAGTTCGATACCGGCTTGGTCGGCGCCCATCA 94111 || ||||||||||| ||||| |||||||| || | || | ||| ||||| | | Sbjct 120 GCTTTGCCATGAAGTGCGCCAGGCAGCGCAGCTCCAATCCCGAGGCGTCCGCGCCGACCT 179 Query 94112 GGGTCCAGCCCTCGGGGACGTAGAAGAGGTCGCGGCAGTCCCAGCCGTGATCGCCCTCGC 94171 || | || |||||| |||| | |||||| || | |||| |||| || Sbjct 180 GGAGCTTCCCTGTTGGGACGCAGAACAACGAGCGGCACTCGAATCCGTAGCCGCCTTCCT 239 Query 94172 GGCCCTT 94178 ||||||| Sbjct 240 GGCCCTT 246 >seq32071 Length=271 Score = 89.7 bits (98), Expect = 7e-13 Identities = 187/274 (68%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 135435 GTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAG 135494 ||||| || | ||| || ||||| ||| || |||| || ||||||| |||||| Sbjct 1 GTGTGCACCACGTCGACCAGGTCGAGCTGCGCGGCCATCACATCGTCGATCGACTTGTAC 60 Query 135495 GCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCC 135554 || ||| |||||| | |||||| |||||| ||||| |||||| | |||||||| Sbjct 61 GCGGCCGGTGATTCGTCCAGCACGCCGCTGTCCTTGCGGCATTCCACGTGCGCGGTGGCC 120 Query 135555 TTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTG-GCCTGGGTCCGCGAC--ATCGTCCGG 135611 | | || | |||| |||| || || | || || || || | ||| |||| Sbjct 121 TCGCGGTGCTGGGCCAGCGTGA---TCTGCTGGCGCGCGGCGCCACGGCTCATCACCCGG 177 Query 135612 CCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAG 135671 || || ||||| ||| | ||| |||||| ||||| |||||||||||||||||| Sbjct 178 CCGGCACCGTGGCTGCAGCTGTGGAAGCTGTCCGCGTTGCCTTTGCCGCGCACGATGTAG 237 Query 135672 GACTTGGC--CCCCATCGAGCCGGGGATGATCCC 135703 || || ||||| |||||| ||||| || Sbjct 238 --CTGCGCGTGCCCATGCTGCCGGGAATGATGCC 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682251613120440