Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq71034 430 2e-115 seq56478 125 1e-23 seq28963 109 8e-19 >seq71034 Length=3563 Score = 430 bits (476), Expect = 2e-115 Identities = 717/1015 (71%), Gaps = 52/1015 (5%) Strand=Plus/Minus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGC-CTTGG 139563 ||||||||||||||||||||||||||||| |||||| || | || || |||| ||||| Sbjct 2545 GCGGCACTCGACGCCTTCGGTCGCCTTGACCTGGTCGTCGACCGAATAG-CGGCGCTTGG 2487 Query 139564 CGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCGT 139623 | ||||||| |||||| || || |||||||| ||| | ||| ||||| | Sbjct 2486 CTTCGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCAGCTGTTGAAACTCTCGGCAT 2427 Query 139624 TGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACT 139683 ||||||||||||||||||| || ||| ||||||||||| || || |||||||||| || Sbjct 2426 TGCCCTTGCCGCGCACGATATAACTCTTCGCCCCCATCGATCCCGGAATGATGCCGAGCT 2367 Query 139684 GGTCCTTCT-GAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 139742 ||||| | ||||| |||||||||||||| ||||| | || || | |||||||| Sbjct 2366 CC-CCTTCGCGCGCCGATACCGCGCCCTTGCGCGTCACCAGCACATCCTTGCCGAAGTGG 2308 Query 139743 AACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGC 139802 ||||||||| |||||||||||||||||||||||||||||| || |||| |||||| Sbjct 2307 TGCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCTTCCACGTGGGTCTCGAAGGGT 2248 Query 139803 GGCAGGCCCGAGGCGCGCA---TGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTG 139859 | | | | ||||| ||| |||| ||| |||||||| || ||||| Sbjct 2247 TTCGCGATCACCGTGCGCACCGCCGCGATCAGGTTCCG---CATCATCACTTCACGGTTC 2191 Query 139860 ATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCG 139919 || || ||||| | ||| ||||| |||| ||||| | ||||||| | | | | || Sbjct 2190 ATGCGGGCGAACTTCTGGGCCCAGCCGACCGCTTCGATATAGTCGTCGTAGTGCTGCGTT 2131 Query 139920 CCTTCCGACAGCCACGCGAGGTCCTTGT-CGAGCGGCTTCTGACCGTCCCGACGCAGCAT 139978 || |||| ||| | || ||||||| || || || | ||| || | | |||| Sbjct 2130 CCCTCCGGCAGATAGGCCAGGTCCTGGTCCGGAAGGTTGATGA-AGT---GGGTCCGCAT 2075 Query 139979 CATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCC 140038 || |||||||| |||||||||| |||||| | |||||||||||||||||||| Sbjct 2074 GTCCTGCTTGGCCTGCTCGATGAAGTGGGTGCCGATCGCATTGCCGACGCCGCGCGAGCC 2015 Query 140039 CGAGTGGAGCATCACCCAGAC---GCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTG 140095 |||||| ||||| | |||||| || ||| |||||||||||||| |||||||||||| Sbjct 2014 CGAGTGCAGCATGAACCAGACGAAGCCCTG---CTCGTCGAGGCAGATCTCGATGAAGTG 1958 Query 140096 GTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAGGGTCTTGTA 140155 ||| ||| |||||||| ||||| || | | |||| | ||| || | Sbjct 1957 GTTACCGGTTCCCAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTGCGCAGCCGCGGCGT 1898 Query 140156 CTTGTCGCAGAGCTTCTCGAA-----CC-----GGGCTTCCAGGCCCGAGTCGAC--CCA 140203 ||| | ||||| ||||| || | | |||||| ||| |||||| | Sbjct 1897 CTTCTGGCAGATGAGGTCGAATTCGTCCTTCAGCGCCATCCAGG-CCGTGTCGACGGCTG 1839 Query 140204 CT---TGCGCAT-GATCGAGTTCGGGATGCCGCTACGCCCGTTCCAGCCGCCCGACGGAC 140259 | |||||| |||| | || || || || || |||||| || | Sbjct 1838 GTGGCGGCGCATCCCACGAGCCC---TTGTCG---CGTCCCTTGAAGCCGCGCGTCTTGG 1785 Query 140260 CCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGCAGCTTGGCGAGGCTGTCG 140318 || | |||||||| || | | |||||||| ||| ||||||| | ||| |||| Sbjct 1784 GCGACATCCCGTGCGGCACCGAGCGCTCGATC-GCGCTGCGCAGCGGCCCCAGGTTGTCC 1726 Query 140319 GGCAGGTCCGAGGCCTTCAGCGAGGTGCGC---ACGGCCATCATGCCGCAGCCGATGTCC 140375 |||||||| || || || |||||| | ||||||||||||||||||||||||| Sbjct 1725 GGCAGGTCGGATGCGCCCA---AGGTGCTCTTGGCGGCCATCATGCCGCAGCCGATGTCG 1669 Query 140376 ACGCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAG 140435 || || || || ||||| ||||| |||||| ||||||||||| ||| | |||||| Sbjct 1668 ACCCCGACCGCGGCCGGAATGATCGCGCCCAGCGTCGGGATCACGCTGCCGATGGTCGAT 1609 Query 140436 CCGATGCCCATGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490 || |||||| ||||||||| |||||| |||| ||| || |||||| |||| Sbjct 1608 CCCTTGCCCACGTGGACGTCGGGCATCGCCGCCATGTGCTTGTAGATGAAGGGCA 1554 >seq56478 Length=247 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 139623 TTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAAC 139682 || || || || ||||||||| || ||| || |||||||| || || ||||| || | | Sbjct 63 TTCCCTTTACCACGCACGATGAAGCTCTTCGCGCCCATCGAACCCGGAATGATACCCAGC 122 Query 139683 TGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 139742 | | ||| | || ||||| ||||||||||| ||||| | || || | |||||||| Sbjct 123 TCGCCCTCGCGCGCGGACACGGCGCCCTTGCGCGTCACCAGCACGTCCTTGCCGAAGTGG 182 Query 139743 AACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGG 139801 |||||||| ||||||||||| ||||||||||| |||||| || ||| | ||| || Sbjct 183 TGTTCCTTCTGCACGTAGTTGTGATGGCAGTTCACTGCTTCCACGTGCGTTTCGAACGG 241 >seq28963 Length=574 Score = 109 bits (120), Expect = 8e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 95402 TAGATCATGGCGTAGATGAAGGTCTTGGCGGTGTCGCGAGACTCCATTTCCATGGCGGCT 95461 |||| | |||||||||||||||||||||| ||||||| | || | | || | | Sbjct 2 TAGAGGAAGGCGTAGATGAAGGTCTTGGCGTTGTCGCGGGTTGGCAGTCCTGCCGCCGAT 61 Query 95462 TGGTGGACGCCGTGGACGTCGCCATCCAGAACGATCTTGCCGTACTGCCCGTTGTCGAAC 95521 |||| |||| ||||| |||||| || || | || |||| |||||| ||| |||| | Sbjct 62 TGGTTGACGGAGTGGATGTCGCCTTCGAGGATGACCTTGGCGTACTCGCCGCCGTCGTGC 121 Query 95522 TCCGCCATGAAGTGCGCCAGACAGCGCAGTTCGATACCCGCTTGGTCGGCGCC 95574 | ||||||||||||||||| |||||||| || | |||| ||| ||||| Sbjct 122 TTTGCCATGAAGTGCGCCAGGCAGCGCAGCTCCAATCCCGAGGCGTCCGCGCC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 697184604172800