Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq71034 439 3e-118 seq56478 154 2e-32 seq28963 107 3e-18 >seq71034 Length=3563 Score = 439 bits (486), Expect = 3e-118 Identities = 732/1047 (70%), Gaps = 42/1047 (4%) Strand=Plus/Minus Query 137207 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 137266 ||||| ||||| | ||| ||||| || ||||| || | || || ||||| |||| ||| Sbjct 2667 CCCTTTACGCACACGACCTGCTTCAGCGTGTGCACCACTTCGACCAGGTCGCTCTGCGCC 2608 Query 137267 TCCATGACCGCGTCGNNNNNNNNNNNNNNNNNNNNNATTTCGTCGATCACGCCGGCGTCC 137326 | ||| || |||||| || |||||||||||||| ||||| Sbjct 2607 TGCATCACGGCGTCGATGTCCTTGTAGGCCATCGGGATCTCGTCGATCACGCCTTCGTCC 2548 Query 137327 TTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGAGTGAAG-GTCGCCTT 137385 ||||||||||| ||||| ||||| ||||||| |||||| || | | || | ||| || Sbjct 2547 TTGCGGCACTCGACGCCTTCGGTCGCCTTGACCTGGTCGTCGACCGAATAGCGGCGC-TT 2489 Query 137386 GGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGC 137445 ||| | ||| || ||| || ||||| |||||||| ||| | ||| || || Sbjct 2488 GGCTTCGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCAGCTGTTGAAACTCTCGGC 2429 Query 137446 ATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAA 137505 ||||||||||||||||||||| || ||| ||||||||||| || || ||||| |||| Sbjct 2428 ATTGCCCTTGCCGCGCACGATATAACTCTTCGCCCCCATCGATCCCGGAATGATGCCGAG 2369 Query 137506 CTGGTCCTTCT-GCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGT 137564 || ||||| ||||||| |||||||||||||| ||||| | || || | |||||| Sbjct 2368 CTCC-CCTTCGCGCGCCGATACCGCGCCCTTGCGCGTCACCAGCACATCCTTGCCGAAGT 2310 Query 137565 GGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACG 137624 || |||||||| |||||||||||||||||||||||||||||| || |||| ||| | Sbjct 2309 GGTGCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCTTCCACGTGGGTCTCGAAGG 2250 Query 137625 GCGGCAGGCCCGACGCCCGCATGGCCTC---CAGGACCCGGACCATCATCATCTCGCGGT 137681 | | | | || |||| ||| | |||| ||| |||||||| || |||| Sbjct 2249 GTTTCGCGATCACCGTGCGCACCGCCGCGATCAGGTTCCG---CATCATCACTTCACGGT 2193 Query 137682 TGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCT 137741 | || || ||||| | |||| ||||| |||| ||||| | ||||||| | | | | || Sbjct 2192 TCATGCGGGCGAACTTCTGGGCCCAGCCGACCGCTTCGATATAGTCGTCGTAGTGCTGCG 2133 Query 137742 CGCCTTC--GCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAG 137799 || || ||||| | || ||||||| |||| | | ||| || || | | Sbjct 2132 TTCCCTCCGGCAGA--TAGGCCAGGTCCTGGTCCGGAAGGTTGATGAAGT---GGGTCCG 2078 Query 137800 CATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGA 137859 ||| || |||||||| |||||||||| | |||||| | ||||||||||||||||| Sbjct 2077 CATGTCCTGCTTGGCCTGCTCGATGAAGTGGGTGCCGATCGCATTGCCGACGCCGCGCGA 2018 Query 137860 GCCCGAGTGGAGCATCACCCAGAC---GCGCTGATCCTCGTCGAGGCAGACCTCGATGAA 137916 ||||||||| ||||| | |||||| || ||| |||||||||||||| ||||||||| Sbjct 2017 GCCCGAGTGCAGCATGAACCAGACGAAGCCCTG---CTCGTCGAGGCAGATCTCGATGAA 1961 Query 137917 GTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGG 137976 |||||| ||| ||||| || ||||| || | |||| | ||| |||| ||| Sbjct 1960 GTGGTTACCGGTTCCCAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTGCGCAGCCGCGG 1901 Query 137977 GTACTTCTCGCAGAGCTTGTCGAA---------CCGCGCC-TCCAGGCCCGAATCGAC-- 138024 ||||| ||||| |||||| | ||||| |||||| ||| ||||| Sbjct 1900 CGTCTTCTGGCAGATGAGGTCGAATTCGTCCTTCAGCGCCATCCAGG-CCGTGTCGACGG 1842 Query 138025 CCACTTGCGCAGGAT-CGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGAC 138083 | | ||| | || | | | || | ||| || || |||||| || | Sbjct 1841 CTGGTGGCGGCGCATCCCACGAGCCCTTGTC---GCGTCCCTTGAAGCCGCGCGTCTTGG 1785 Query 138084 CCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGAAGCTTGGACAGGCTGTCG 138142 || | |||||||| || | | |||||||| ||| ||| ||| |||| |||| Sbjct 1784 GCGACATCCCGTGCGGCACCGAGCGCTCGATC-GCGCTGCGCAGCGGCCCCAGGTTGTCC 1726 Query 138143 GGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACG 138202 || ||||| || ||| || | || | | | |||||||||||||||||||||||||| Sbjct 1725 GGCAGGTCGGATGCGCCCAAGGTGCTCTTGGCGGCCATCATGCCGCAGCCGATGTCGACC 1666 Query 138203 CCGACGGCGGCCGGGATGATCGCGCCC 138229 ||||| |||||||| |||||||||||| Sbjct 1665 CCGACCGCGGCCGGAATGATCGCGCCC 1639 >seq56478 Length=247 Score = 154 bits (170), Expect = 2e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 137401 CATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCG 137460 |||||| ||||| |||||||| ||| | ||| |||| ||| || || || || Sbjct 17 CATCGTGCGGCCGGCGCCGTGGCTGCAGCTGTGGAAGCTCTCCGGATTCCCTTTACCACG 76 Query 137461 CACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGC 137520 ||||||| || ||| || |||||||| || || ||||| || | || | ||| |||| Sbjct 77 CACGATGAAGCTCTTCGCGCCCATCGAACCCGGAATGATACCCAGCTCGCCCTCGCGCGC 136 Query 137521 CGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGAC 137580 ||||| ||||||||||| ||||| | || || | |||||||| ||||||||| || Sbjct 137 GGACACGGCGCCCTTGCGCGTCACCAGCACGTCCTTGCCGAAGTGGTGTTCCTTCTGCAC 196 Query 137581 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 137625 ||||||||| ||||||||||| |||||| || ||| | |||||| Sbjct 197 GTAGTTGTGATGGCAGTTCACTGCTTCCACGTGCGTTTCGAACGG 241 >seq28963 Length=574 Score = 107 bits (118), Expect = 3e-18 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 95343 TAGATCATGGCGTAGATGAAGGTCTTGGCGGTGTCGCGCGACTCCATCTCCATG--GCCG 95400 |||| | |||||||||||||||||||||| ||||||| | || ||| || |||| Sbjct 2 TAGAGGAAGGCGTAGATGAAGGTCTTGGCGTTGTCGCGGGTTGGCAG-TCC-TGCCGCCG 59 Query 95401 CTTGGTGGACGCCGTGGACATCGCCATCGAGCACGATCTTGCCGTACTGCCCGTTGTCGA 95460 ||||| |||| ||||| ||||| ||||| | || |||| |||||| ||| |||| Sbjct 60 ATTGGTTGACGGAGTGGATGTCGCCTTCGAGGATGACCTTGGCGTACTCGCCGCCGTCGT 119 Query 95461 ACTCCGCCATGAAGTGGGCCAGACAGCGCAGTTCGATACCGGCTTGGTCGGCGCCCATCA 95520 || ||||||||||| ||||| |||||||| || | || | ||| ||||| | | Sbjct 120 GCTTTGCCATGAAGTGCGCCAGGCAGCGCAGCTCCAATCCCGAGGCGTCCGCGCCGACCT 179 Query 95521 GGGTCCAGCCCTCGGGGACGTAGAAGAGGTCGCGGCAGTCCCAGCCGTGATCGCCCTCGC 95580 || | || |||||| |||| | |||||| || | |||| |||| || Sbjct 180 GGAGCTTCCCTGTTGGGACGCAGAACAACGAGCGGCACTCGAATCCGTAGCCGCCTTCCT 239 Query 95581 GGCCCTT 95587 ||||||| Sbjct 240 GGCCCTT 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691287459720480