Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq71034 403 2e-107 seq56478 149 9e-31 seq28963 107 3e-18 >seq71034 Length=3563 Score = 403 bits (446), Expect = 2e-107 Identities = 664/940 (71%), Gaps = 42/940 (4%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 |||||| |||||||||||||||| ||||| ||||| ||||||| |||||| || | | Sbjct 2560 CACGCCTTCGTCCTTGCGGCACTCGACGCCTTCGGTCGCCTTGACCTGGTCGTCGACCGA 2501 Query 136138 GAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 || | ||| ||||| | ||| || ||| || ||||| |||||||| ||| | Sbjct 2500 ATAGCGGCGC-TTGGCTTCGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCAGCTGT 2442 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 ||| || || |||||||||||||||||||| || ||| ||||||||||| || | Sbjct 2441 TGAAACTCTCGGCATTGCCCTTGCCGCGCACGATATAACTCTTCGCCCCCATCGATCCCG 2382 Query 136257 GGATGATCCCGAACTGGTCCTTCT-GCGCCGACACCGCGCCCTTGCGGGTCACGAAGACC 136315 | ||||| |||| || ||||| ||||||| |||||||||||||| ||||| | || Sbjct 2381 GAATGATGCCGAGCTCC-CCTTCGCGCGCCGATACCGCGCCCTTGCGCGTCACCAGCACA 2323 Query 136316 CACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTG 136375 || | |||||||| |||||||| |||||||||||||||||||||||||||||| | Sbjct 2322 TCCTTGCCGAAGTGGTGCTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCTTCCACG 2263 Query 136376 TCCGTCTTGAACGGCGGCAGGCCCGACGCTCGCATGGCCTC---CAGGACCCGGACCATC 136432 | |||| ||| || | | | || |||| ||| | |||| ||| |||| Sbjct 2262 TGGGTCTCGAAGGGTTTCGCGATCACCGTGCGCACCGCCGCGATCAGGTTCCG---CATC 2206 Query 136433 ATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCG 136492 |||| || ||||| || || ||||| | |||| ||||| |||| ||||| | |||||| Sbjct 2205 ATCACTTCACGGTTCATGCGGGCGAACTTCTGGGCCCAGCCGACCGCTTCGATATAGTCG 2146 Query 136493 TGGAACTCCGGCTCGCCTTC--GCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCC 136550 | | | | | || || || ||||| | || ||||||| |||| | | || Sbjct 2145 TCGTAGTGCTGCGTTCCCTCCGGCAGA--TAGGCCAGGTCCTGGTCCGGAAGGTTGATGA 2088 Query 136551 CGTCACGGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGC 136610 || || | |||| || |||||||| |||||||||| | |||||| | |||| Sbjct 2087 AGT---GGGTCCGCATGTCCTGCTTGGCCTGCTCGATGAAGTGGGTGCCGATCGCATTGC 2031 Query 136611 CGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC---GCGCTGGTCCTCGTCGAGGC 136667 |||||||||||||||||||||| ||||| | |||||| || ||| ||||||||||| Sbjct 2030 CGACGCCGCGCGAGCCCGAGTGCAGCATGAACCAGACGAAGCCCTG---CTCGTCGAGGC 1974 Query 136668 AGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGT 136727 ||| ||||||||||||||| ||| ||||| || ||||| || | |||| | || Sbjct 1973 AGATCTCGATGAAGTGGTTACCGGTTCCCAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGT 1914 Query 136728 TCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAA---------CCGCGCC-TCCAGG 136777 | |||| ||| ||||| ||||| |||||| | ||||| |||||| Sbjct 1913 TGCGCAGCCGCGGCGTCTTCTGGCAGATGAGGTCGAATTCGTCCTTCAGCGCCATCCAGG 1854 Query 136778 CCCGAGTCGAC--CCACTTGCGCAGGAT-CGAGTTGGGGATGCCGCTGCGCCCGTTCCAG 136834 ||| |||||| | | ||| | || | | | || | ||| || || || Sbjct 1853 -CCGTGTCGACGGCTGGTGGCGGCGCATCCCACGAGCCCTTGTC---GCGTCCCTTGAAG 1798 Query 136835 CCGCCCGACGGACCCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCG-AGCGAAGCTT 136893 |||| || | || | |||||||| || | | |||||||| ||| ||| ||| Sbjct 1797 CCGCGCGTCTTGGGCGACATCCCGTGCGGCACCGAGCGCTCGATC-GCGCTGCGCAGCGG 1739 Query 136894 GGCGAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCA 136953 | ||| |||| || ||||| || ||| || | || | | | |||||||||||||| Sbjct 1738 CCCCAGGTTGTCCGGCAGGTCGGATGCGCCCAAGGTGCTCTTGGCGGCCATCATGCCGCA 1679 Query 136954 GCCGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 136993 |||||||||||| ||||| |||||||| |||||||||||| Sbjct 1678 GCCGATGTCGACCCCGACCGCGGCCGGAATGATCGCGCCC 1639 >seq56478 Length=247 Score = 149 bits (164), Expect = 9e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 136165 CATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCGTTGCCCTTGCCGCG 136224 |||||| ||||| |||||||| ||| | ||| |||| || || || || || Sbjct 17 CATCGTGCGGCCGGCGCCGTGGCTGCAGCTGTGGAAGCTCTCCGGATTCCCTTTACCACG 76 Query 136225 CACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGC 136284 ||||||| || ||| || |||||||| || || ||||| || | || | ||| |||| Sbjct 77 CACGATGAAGCTCTTCGCGCCCATCGAACCCGGAATGATACCCAGCTCGCCCTCGCGCGC 136 Query 136285 CGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGAC 136344 ||||| ||||||||||| ||||| | || || | |||||||| ||||||||| || Sbjct 137 GGACACGGCGCCCTTGCGCGTCACCAGCACGTCCTTGCCGAAGTGGTGTTCCTTCTGCAC 196 Query 136345 GTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGG 136389 ||||||||| ||||||||||| |||||| || ||| | |||||| Sbjct 197 GTAGTTGTGATGGCAGTTCACTGCTTCCACGTGCGTTTCGAACGG 241 >seq28963 Length=574 Score = 107 bits (118), Expect = 3e-18 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 94500 TAGATCATGGCGTAGATGAAGGTCTTGGCGGTGTCGCGCGACTCCATCTCCATG--GCCG 94557 |||| | |||||||||||||||||||||| ||||||| | || ||| || |||| Sbjct 2 TAGAGGAAGGCGTAGATGAAGGTCTTGGCGTTGTCGCGGGTTGGCAG-TCC-TGCCGCCG 59 Query 94558 CTTGGTGGACGCCGTGGACATCGCCATCGAGCACGATCTTGCCGTACTGCCCGTTGTCGA 94617 ||||| |||| ||||| ||||| ||||| | || |||| |||||| ||| |||| Sbjct 60 ATTGGTTGACGGAGTGGATGTCGCCTTCGAGGATGACCTTGGCGTACTCGCCGCCGTCGT 119 Query 94618 ACTCCGCCATGAAGTGGGCCAGACAGCGCAGTTCGATACCGGCTTGGTCGGCGCCCATCA 94677 || ||||||||||| ||||| |||||||| || | || | ||| ||||| | | Sbjct 120 GCTTTGCCATGAAGTGCGCCAGGCAGCGCAGCTCCAATCCCGAGGCGTCCGCGCCGACCT 179 Query 94678 GGGTCCAGCCCTCGGGGACGTAGAAGAGGTCGCGGCAGTCCCAGCCGTGATCGCCCTCGC 94737 || | || |||||| |||| | |||||| || | |||| |||| || Sbjct 180 GGAGCTTCCCTGTTGGGACGCAGAACAACGAGCGGCACTCGAATCCGTAGCCGCCTTCCT 239 Query 94738 GGCCCTT 94744 ||||||| Sbjct 240 GGCCCTT 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683146158816960