Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq18201 300 4e-77 seq30077 84.2 6e-12 >seq18201 Length=11482 Score = 300 bits (332), Expect = 4e-77 Identities = 423/589 (72%), Gaps = 4/589 (1%) Strand=Plus/Plus Query 12446 GGTCACGGCATTGGTAAATCCGCATTCATCTCAATGCTGATCAACTGGGGCATGTCCACT 12505 |||||||| || || || ||||| | ||| ||||| | | |||||| ||| ||| Sbjct 243 GGTCACGGTATCGGCAAGTCCGCGCTGATCGGCATGCTCACCGGCTGGGGGATGGACACC 302 Query 12506 TGCGAGGATTGTAAGGTCGTGGTGACCGCCAACACCGACAACCAGCTACGAACGAAGACC 12565 |||||||| || |||||||||||||||||||||| |||||| || ||||||||| Sbjct 303 TGCGAGGACTGCCGCATCGTGGTGACCGCCAACACCGAGGGCCAGCTGCGCACGAAGACC 362 Query 12566 TGGCCGGAAATTATCAAGTGGTCAAACCTTGCTATCACGAAAGACTGGTTTACCTGTACA 12625 ||||||||||| |||||| ||| | ||||| | |||||| | | | Sbjct 363 TGGCCGGAAATCTCGAAGTGGCGGCGCCTGACCATCACCGAGCACTGGTGGAACGTGCCG 422 Query 12626 GCTACCGCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGACGCAATC 12685 || | |||| ||| || || || || | ||| ||| | ||||| || ||||| | Sbjct 423 GCCATGTCGATCTACTCGAACGAGCCAGGCCGCGAGAAGAGCTGGCGCGCCGACGCCACG 482 Query 12686 CCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCATC 12745 |||||| ||||||||||| ||||| |||||||| || |||||| || |||| |||||| Sbjct 483 CCCTGGAGCGAGCACAACACCGAGGCGTTCGCCGGCCTGCACAACAAGGGCAAGCGCATC 542 Query 12746 ATCGTGGTATTCGATGAAGCGTCGAACATTGCCGATCTGGTGTGGGAGGTAGCAGAGGGT 12805 ||||| | | ||| || || ||||| || ||||| ||| ||||| || | || || Sbjct 543 ATCGTCATCTACGACGAGGCCTCGAAGATCGCCGACAAGGTCTGGGAAGTCACCGACGGC 602 Query 12806 GCGCTTACGGACGAAGACACTGAGATTATCTGGGTGGCGTTCGGAAACCCGACGCGTAAC 12865 || ||||| ||||| ||||| || || |||||| | || ||||| |||||||||| | Sbjct 603 GCACTTACCGACGAGGACACCGAAATCATCTGGATCGCCTTCGGGAACCCGACGCAGTCC 662 Query 12866 ACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCG-CAGAT 12924 || || || |||||||| || |||||| || |||| |||| || ||| || || Sbjct 663 ACAGGCCGCTTCCGCGAGTGCTTCCGCCGGTACCGCCACCTCTGGGTGAC-GCGCCACAT 721 Query 12925 TGACAGCCGGACGGTGGAAGGCACTAACAAACAGCAGTTGCAGAAATGGGTTGATGAC-T 12983 |||||||| || || || ||||| ||||| ||| | || | | | | || ||| Sbjct 722 CGACAGCCGCACCGTCGAGGGCACGAACAAGCAGTACCTGGACGAGTTCG-TGGCGACGC 780 Query 12984 ACGGGGAAGACAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCC 13032 |||| || ||||||||| |||| || |||| ||||||||| | ||||| Sbjct 781 ACGGCGAGGACAGCGACATCGTCAAGGTCCGCGTGCGCGGCCTGTTCCC 829 Score = 104 bits (114), Expect = 7e-18 Identities = 203/297 (68%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 18123 ACTGGCTGATCTGAACGGCAATACCGCCGAATTCCGCCTGTCTGAAGACCGCGCATTTAT 18182 |||||| | ||||||||||| |||| ||||||||||| |||||| || || || Sbjct 6324 ACTGGCGAAGCTGAACGGCAACGAAGCCGCCTTCCGCCTGTCGGAAGACGAAGCCTTCAT 6383 Query 18183 TGAAGCGATGAATCAGCAGATGGCGCAGACGC--TGTTTTATGGTGATTCCAGCGTTAAC 18240 || |||||||| ||| ||||| | ||| |||| || ||| | | || || Sbjct 6384 CGAGGCGATGAACCAGACCATGGCC--GGCGCCATGTTCTACGGTAACCCGGGCACCGAC 6441 Query 18241 CCTCAGCAGTTTATGGGACTGTCCTCCCGCTATTCCAGC---CTGTCTGCGGGTAATGCT 18297 || | ||||| |||| ||| |||| || |||| ||| || || || | Sbjct 6442 CCGCGCCAGTTCCTGGGCCTGCAAACCCGTTA---CAGCTCGCTGAGCGCTGGGAACGGC 6498 Query 18298 CAGAACATCATTGATGCTGGTGGCACGGGTACAGATAACACCTCTATCTGGTTAGTGGTG 18357 ||||||||| | || || |||||||| || || | |||||||| |||| | |||||| Sbjct 6499 CAGAACATCCTCGACGCCGGTGGCACCGGCACCAACAACACCTCCATCTACCTGGTGGTG 6558 Query 18358 TGGGGCGAAAACACCGTGCATGGCATCTTCCCGAAAGGGCAGAAGGCTGGCATCCAG 18414 ||||| || |||||||| || |||||||| || ||| |||||| | ||| Sbjct 6559 TGGGGTGAGAACACCGTCTTCTGCCCGTTCCCGAAGGGTTCGAAAGCTGGCCTGCAG 6615 >seq30077 Length=415 Score = 84.2 bits (92), Expect = 6e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 14431 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 14489 |||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||| Sbjct 338 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139654045190452