Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq50522 82.4 2e-11 >seq50522 Length=209 Score = 82.4 bits (90), Expect = 2e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 11893 CGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTGCTGCCATCATGTCATCGCGGCT 11952 ||||| || |||| || |||||| || | ||| | || |||| |||||||| || | Sbjct 173 CGGCACGATGCCCAGCAGCTGCGGGGGTATGCGCAGCGCGGCCAGAATGTCATCACGAGT 114 Query 11953 CACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAACCTCCGAAAGTGGAATGATTTG 12012 ||| ||||||| ||||||||||| || || || || | || || | || Sbjct 113 CACACGCTTGATGCCGGTGAACTCATCCTTGGCCGCCACTTCGCTGATCGGGATCAGCTG 54 Query 12013 GATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACAGGTTGCGGAAGTTGC 12065 | || ||||| || || |||||||| | ||| |||||||||||||| |||| Sbjct 53 CAATCCATCCTTCTTGCCATTGGGCGAATGCATGAACAGGTTGCGGAAATTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106361914049198