Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq60244 277 3e-69 >seq60244 Length=9325 Score = 277 bits (306), Expect = 3e-69 Identities = 584/863 (68%), Gaps = 25/863 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||||||||| |||| || ||||||| ||| Sbjct 458 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTC 517 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCC-GTGTCAGGCCCATCTGTTCCAGCA 47957 ||| || ||| ||||||| | ||| |||| | || ||| |||| | |||| Sbjct 518 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAG-CCCAGCGCCATGAGCA 576 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||||||||| | ||||||| | ||||||||| | ||| | Sbjct 577 GGCGGTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCG 636 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || | || |||||| |||| || | |||||| || || |||| Sbjct 637 CGCAGGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCT 696 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 ||||||||||| | ||| ||||||| || | ||||| | |||||| | Sbjct 697 CGAAGACGCGGGACTCGTCCAGCTTGCCGCGCAGGA---TGTCGTAGAGGAGGCAGGCGA 753 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || |||| Sbjct 754 AGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCA 813 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| ||||| || || |||||||| || || ||| ||||| |||||||||||||||| Sbjct 814 TGAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCT 873 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCG-TTCTTGTCTGAGATCCAG 48316 | || ||||| ||| || | ||| | |||||| | | | | ||||||| Sbjct 874 CGACGCAGGCGAAGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAG 929 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-- 48374 || |||||||| ||||| | | || || || || ||||| ||||||| Sbjct 930 CGGAGGGCCCAGTCGGCCTTGCGGCGAACGGCGGGGATGGTGTCGATGGCGCGGAAGAGG 989 Query 48375 -GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATC 48430 | | ||| ||| | |||| | ||||| |||||||| | ||||||| Sbjct 990 CGGTCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCTATGAGCAGC---GAGTACATC 1043 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | ||||| || ||||||||||| |||||||| ||||||||||| ||| Sbjct 1044 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCCCTGGCCTCGGCGACC 1103 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || | ||| || || ||||| || || || || || || || Sbjct 1104 TGCACGTCAGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCG 1163 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA---GCATTCCAG 48607 |||||||| || ||||| | ||| |||||||||| || || |||| | | |||| Sbjct 1164 AAGAAGGCGAGCACATGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGAGTCGTGTCCCAG 1223 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTT 48667 | |||| | |||||||| || || | ||||||||||| || | || || Sbjct 1224 TGGCGCGCGTCGGAGGAGAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCACCGCCTTC 1283 Query 48668 TTGTACATGCCCCATATGTCCGG 48690 ||||| | |||| || | ||| Sbjct 1284 TTGTAGAACTCCCAGATCTGCGG 1306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 907337388291840