Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq60244 223 6e-53 >seq60244 Length=9325 Score = 223 bits (246), Expect = 6e-53 Identities = 569/858 (66%), Gaps = 29/858 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| |||||||||||| ||| | || || Sbjct 1300 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTC 1241 Query 25537 GCCAAGGACATGGACGGCTGGTACGC---TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | ||| ||||| ||||||| || || || Sbjct 1240 TCCTCCGACGCGCGCCACTGGGACACGACTCTCTCCAACGACGAGCGCCACTTCATCTCC 1181 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | ||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 1180 CATGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 1121 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||||| | ||||||||| |||||||| |||||| Sbjct 1120 TTCATGTCTGACGTGCAGGTCGCCGAGGCCAGGGCTTTCTACGGCTTCCAGATCGCCATC 1061 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| | ||| || || ||| ||||| |||| | Sbjct 1060 GAGAACATCCACTCCGAGATGTACTC---GCTGCTCATAGAGACCTACATCCGCGACGAC 1004 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | ||||| || || || || | |||||||| ||| ||| | | | ||||| Sbjct 1003 GTCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTTCGCCGCAAGGCC 944 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAG-AGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| | |||||| || || | |||||| || |||||| | || || Sbjct 943 GACTGGGCCCTCCGCTGGATCGACGGCGGGGAGCGCTTCGC----CGAGCGCATCGTCGC 888 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTC 25947 ||| || ||| || ||||||||||| ||| || || || |||| ||||||||||||| Sbjct 887 CTTCGCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTG 830 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || |||| |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 829 AAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 770 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 || || ||| | || || |||||||| |||||| | | | ||| | | || || Sbjct 769 GGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACATCCTGCGCGGC-AAGCTGGA 714 Query 26068 CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | || | ||||| | ||| || ||||| ||||| || |||| |||||| Sbjct 713 CGAGTCCCGCGTCTTCGAGATCGTCTCCGAGGCCGTGGACATTGAGAGGGAGTTCGTCTG 654 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 653 CGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 594 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--C 26243 || ||||| |||| ||||| || | |||||| | || || |||| |||| | Sbjct 593 GTTCGTGGCAGACCGCCTGCTCATGGC-GCTGGGCTGCAACAAGCTGTACA--ACGCCAC 537 Query 26244 TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAA 26303 ||||||||||||| ||||| ||| ||| || | || ||||| |||||||| || || Sbjct 536 CAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAA 477 Query 26304 GAGGGTCGGCGACTATCA 26321 | | |||||||| || || Sbjct 476 GCGCGTCGGCGAGTACCA 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904719205765440