Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq1975374 91.5 4e-14 seq18566 89.7 2e-13 >seq1975374 Length=208 Score = 91.5 bits (100), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 22851 GAATGGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAG 22910 || |||||||| | || || ||||| ||||| |||| |||||||| ||||| | Sbjct 205 GATTGGTTCGGCGACGTGCCGGCCTTCATCATCACCTTGGCTGCTGACTACTGCGCCGCC 146 Query 22911 TGCTCCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCT 22970 || |||||| || |||||||||||||| || || ||| | | ||||| || || Sbjct 145 TGTTCCGACGCTGACTTCTGCGCGCTGGTGGAGCACGAGTTATTTCACATCGCTCAGGCC 86 Query 22971 ACTGATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATG 23030 | ||| ||| ||| ||||| || || | | || ||| |||| ||| | ||| Sbjct 85 AAGGATCAATACGGCGCTCCCAAGTTCACCCAAGA---AGGACTGCCCAAGCTTGAGATG 29 Query 23031 CGCGGTCACGATGTTGAGGAATTCGT 23056 ||||| ||||| ||||| || ||||| Sbjct 28 CGCGGACACGACGTTGAAGAGTTCGT 3 >seq18566 Length=1918 Score = 89.7 bits (98), Expect = 2e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 13202 CGGTTACAACGTTGATCATCGTGAGTTGAAAGCCAGCGATTACGGTACGCCGACAATCAG 13261 ||| ||||| || || || |||||| || ||||| || |||||||| ||| | Sbjct 449 CGGCTACAAGGTCGAATTCCGCGAGTTGCGCGCGAGCGAGCACAACACGCCGACGATCCG 508 Query 13262 AAAGCGGTTGTTCGTTGTCGCTCGTTGTGATGGGCATCCTGTTGAATGGCCGGAGGCTAC 13321 |||||| ||||| | || ||||| ||||||| | || | | ||||||||| | Sbjct 509 AAAGCGCCTGTTCATGGTGGCTCGCCGTGATGGACTGCCGATCGCCTGGCCGGAGCAGTC 568 Query 13322 ACACGGCGATCCTAAATCACCCGCAGTTCAAGC-CGGTAAATTAGAGCCGTGGCGCACAG 13380 || | | ||| | ||||||| | |||||| ||| || | | ||| ||||| | Sbjct 569 GCATGCTGCCCCTGA-TCACCCGATGGTCAAGCGCGGGAAGCTGAAACCGCACCGCACCG 627 Query 13381 CTGCTGAGTGTATTGATTGGTCGATCCCTTGCCCGTCTATTTTCGAGCGCAAAAAGCCTT 13440 | || || || || ||||||||| | || || || || || | || || |||| Sbjct 628 CGGCCGAATGCATCGATTGGTCGTTGCCGTGTCCAAGCATCTTTGGCCGAAAGCGCCCTT 687 Query 13441 TGGCCGAAAACACACTGCGACGCATCGC 13468 ||||||| ||||||||| |||||||| Sbjct 688 TGGCCGACGCCACACTGCGCCGCATCGC 715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151108261116992