Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq980070 262 1e-65 >seq980070 Length=1613 Score = 262 bits (290), Expect = 1e-65 Identities = 500/733 (68%), Gaps = 10/733 (1%) Strand=Plus/Minus Query 45494 GATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAG 45553 ||||| || || || ||||| || ||||||||| ||| ||||||| ||| ||||| Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880 Query 45554 GACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTG 45613 ||||| |||||||| |||||||| || ||| |||| | |||||||| ||||||| Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCATGAACTC 820 Query 45614 CTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATT 45673 ||||||| | || || || ||| | ||| || |||| || || || |||| Sbjct 819 ATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGATC 760 Query 45674 TGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGG 45733 ||||||||||||||||| || |||||| | || ||||| ||||||||| || ||||| Sbjct 759 TGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCGC 700 Query 45734 TCGTGGAAAGGGGCTGACGG---GAAAACGGTCGACCAAATTGCGGC--GGTCTTTAAGG 45788 ||| | | ||||| | | | ||||||| | | || ||| | | Sbjct 699 AGCTGGCCGGCCCCGGACGGCCGGCACA---TCGACCAGGT--CAGCCAGGTGCTGGACC 645 Query 45789 AAATCAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGT 45848 | |||| | ||| ||| ||||||| || || | || ||| ||||||||||| | Sbjct 644 AGATCAGGAACAATCCGGACTCGCGCCGCCTGATCGTCTCCGCCTGGAACGTGGCCGACG 585 Query 45849 TGGGGGAAATGAAGTTGCCCCCATGTCATTACGCCTTTCAGTTTTACGTCGCGAATGGCC 45908 || | | |||||| |||| || || || | ||| ||||| ||||| || | ||| Sbjct 584 TGCCGCAGATGAAGCTGCCGCCCTGCCACGCCTTCTTCCAGTTCTACGTGGCCGACGGCA 525 Query 45909 GGTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACA 45968 | |||| ||| | | ||||| | ||| | || || || |||| || || | Sbjct 524 AGCTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATA 465 Query 45969 TCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCG 46028 ||||| ||| || ||| |||| || ||| | ||||| || || ||| || || |||| Sbjct 464 TCGCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCG 405 Query 46029 AACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAAC 46088 | |||| | |||||||||||| ||| ||||| || || ||||||| | | | Sbjct 404 ACTTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGC 345 Query 46089 TGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGT 46148 ||||||| ||||||| ||| |||||||| | ||| || ||||| || ||||| | Sbjct 344 TGCAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATT 285 Query 46149 CTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACCCGCACCCGGCGA 46208 | | || ||||| | ||| || || || | |||||||| || ||||| || |||| Sbjct 284 CGCTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGA 225 Query 46209 TTAAGGCTCCTGT 46221 | ||||| || || Sbjct 224 TCAAGGCCCCGGT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153857897147314