Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq18368 212 2e-50 seq138243 197 5e-46 >seq18368 Length=1007 Score = 212 bits (234), Expect = 2e-50 Identities = 243/326 (75%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 9696 ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGC 9755 ||||| || |||||||| |||||| |||| ||||| |||||||| || |||||||| || Sbjct 163 ATGGCTTCAGTCAACAAGGTCATCATCGTGGGCAACCTCGGTGCTGATCCGGAAACACGT 222 Query 9756 TATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAAG 9815 || | || || |||||||| || ||||||||||| | || || |||||||| | ||| Sbjct 223 TACATGCCCAGTGGCGACGCGGTCACCAACATCCGCGTGGCAACCACCGATCGCTTTAAG 282 Query 9816 GACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGGC 9875 ||||| | ||||| || | |||| ||||| ||||| ||| |||| |||||||| Sbjct 283 GACAAGGGTAGCGGTGAGATGCGCGAAGCCACCGAATGGCATCGCATCGCGTTCTTCGGT 342 Query 9876 CGCCTCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGGG 9935 ||| | || || |||| | |||| | ||| ||||| | ||||||||||||||||| Sbjct 343 CGCTTGGCGGAAATCGCTGGCGAGTATCTGAAGAAGGGATCGTCGGTCTACATCGAGGGT 402 Query 9936 CGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATC 9995 || | ||||| || | || ||| || ||||||| | | |||| |||||||| Sbjct 403 CGTCTGAAAACCCGTCAATG---GGAGAAAGACGGCCAGAAGCAATACAGCACCGAGATT 459 Query 9996 GTCGCCGACAAGATGCAGATGCTCGG 10021 ||||| || ||||||||||||| || Sbjct 460 GTCGCGGAGCAGATGCAGATGCTTGG 485 >seq138243 Length=1642 Score = 197 bits (218), Expect = 5e-46 Identities = 240/327 (73%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 9695 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCG 9754 ||||||||| |||||||| |||||| |||||||||| ||||| ||| ||||||| ||| Sbjct 441 CATGGCATCAGTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCG 382 Query 9755 CTATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAA 9814 ||| | |||||||||||||| ||| |||||||| | || || | | | ||| Sbjct 381 CTACATGCCGAGCGGCGACGCCATCGCCAACATCGCAGTGGCCACCTCGTACAAATCCAA 322 Query 9815 GGACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGG 9874 |||| || |||||| |||||| ||||||| ||||||||| || |||||||||| Sbjct 321 GGACCGCAACACCGGCGAGCAGAAAGAACTGACCGAATGGCACCGCATCTCCTTCTTCGG 262 Query 9875 CCGCCTCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGG 9934 ||| ||||| || ||||||| | || ||||| || || | ||||||||| |||| || Sbjct 261 CCGTCTCGCTGAAATCGTCGGCCAGTACCTGAAGAAAGGTTCCTCGGTCTACGTCGAAGG 202 Query 9935 GCGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGAT 9994 ||| | | || || |||| || | |||| || |||||| | ||||| || Sbjct 201 CCGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCATCGAACGCTACGCCACCGACAT 142 Query 9995 CGTCGCCGACAAGATGCAGATGCTCGG 10021 | |||| || || ||||||||||| || Sbjct 141 CATCGCTGAAAACATGCAGATGCTGGG 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196357095586468