Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq18201 302 1e-77 >seq18201 Length=11482 Score = 302 bits (334), Expect = 1e-77 Identities = 479/678 (71%), Gaps = 14/678 (2%) Strand=Plus/Plus Query 769 TGGCAGGCTGACGCATTCAAGGAGATCCGCGATCACCTACGCAGTGAA--AACAGGTTTG 826 ||||||| ||| | || | |||| |||| ||||| |||| | ||| | || Sbjct 159 TGGCAGGTCGACATCCTGAACGTGATCGGCGACCACCT--GCAGGGGCCGAACCGCTTCC 216 Query 827 AGCCATTGCTGCTCGCCAGGGCATCAGGCCACGGTATCGGCAAATCGGCCTTCATCAGCA 886 |||| ||| ||||| || | || |||||||||||||| || || | ||| ||| Sbjct 217 AGCCGCTGCGCATCGCCGTCGCGGCCGGTCACGGTATCGGCAAGTCCGCGCTGATCGGCA 276 Query 887 TGCTCATCGACTGGGCAGAGAGCACAGCCGTAGACACCCGCGTCGTCGTGACGGCCAACA 946 |||||| || ||||| | ||| || ||| |||| |||| ||||| ||||||| Sbjct 277 TGCTCACCGGCTGGGGGATGGACACCTGCGAGGACTGCCGCATCGTGGTGACCGCCAACA 336 Query 947 CCGAAACACAGCTGCGCACCAAGACCTGGCCGGAGATTGCCAAATGGCGCCGGCTCAGCC 1006 |||| ||||||||||| |||||||||||||| || | || ||||| || || | | Sbjct 337 CCGAGGGCCAGCTGCGCACGAAGACCTGGCCGGAAATCTCGAAGTGGCGGCGCCTGACCA 396 Query 1007 TGTTCTCGCACTGGTTCAAGACCACGGCCACATCGATCGTTTCCCTCGACCCCAAACACT 1066 | | |||||||| || |||||| |||||| || ||| || | | Sbjct 397 TCACCGAGCACTGGTGGAACGTGCCGGCCATGTCGATCTACTCGAACGAGCCAGGCCGCG 456 Query 1067 CCGCATCCTGGCGCGCCGACGCCGTGCCATGGTCCGACACCAACACCGAGGCATTCGCCG 1126 |||||||||||||||| ||| ||| ||| |||||||||||| ||||||| Sbjct 457 AGAAGAGCTGGCGCGCCGACGCCACGCCCTGGAGCGAGCACAACACCGAGGCGTTCGCCG 516 Query 1127 GCCTGCACAACGAGGGCAAGCGCATCATCCTGATCTTCGATGAGGCTTCGAACATCAGCG 1186 ||||||||||| ||||||||||||||||| | |||| ||| ||||| ||||| ||| || Sbjct 517 GCCTGCACAACAAGGGCAAGCGCATCATCGTCATCTACGACGAGGCCTCGAAGATCGCCG 576 Query 1187 ACAAGGTGTGGGAAGTGGCTGAGGGTGCGCTGACTGACGAGAACACCGAGATCATATGGG 1246 ||||||| |||||||| | || || || || || |||||| ||||||| ||||| ||| Sbjct 577 ACAAGGTCTGGGAAGTCACCGACGGCGCACTTACCGACGAGGACACCGAAATCATCTGGA 636 Query 1247 TGGCATTCGGCAACCCGACGCGCAACACAGGCCGATTCCGCGAGTGCTTCCGCAAGTTCA 1306 | || ||||| |||||||||| ||||||||| |||||||||||||||||| || | Sbjct 637 TCGCCTTCGGGAACCCGACGCAGTCCACAGGCCGCTTCCGCGAGTGCTTCCGCCGGTACC 696 Query 1307 AGCACCGGTGGAAGTG-CAAG-CAGATCGATGCCAGGACTGTTGAAGGCACCAACAAGAC 1364 |||| ||| ||| | | || ||||| | | || || || ||||| |||||| Sbjct 697 GCCACCTCTGG--GTGACGCGCCACATCGACAGCCGCACCGTCGAGGGCACGAACAAG-- 752 Query 1365 CCAGCACCAGAAGTGGAT--TGATGAC-TGGGGTGAAGATTCCGACTTCGTCCGCGTCCG 1421 ||| ||| | | | | || ||| || || || |||| ||||| ||||| Sbjct 753 -CAGTACCTGGACGAGTTCGTGGCGACGCACGGCGAGGACAGCGACATCGTCAAGGTCCG 811 Query 1422 TGTGCGCGGCATGTTCCC 1439 ||||||||| ||||||| Sbjct 812 CGTGCGCGGCCTGTTCCC 829 Score = 174 bits (192), Expect = 4e-39 Identities = 502/750 (67%), Gaps = 53/750 (7%) Strand=Plus/Plus Query 5739 GTAGCGGAACTGCTGAGCCAGGACAACGAAATGCTGCTCGACATGCCGTGGT--ACGAGG 5796 || || || || ||| |||| ||||||||| || ||| || || | | || | Sbjct 6109 GTGGCAGAGCTCCTGTCCCAGACCAACGAAATCCTCGAGGAC--GCGGTCTTCAAGGAAG 6166 Query 5797 GCAACTTGCCCACCGGCCACCGCGTGACCACTCGCACCGGCCTGCCTGAGCCTGTATGGC 5856 ||||| |||||||||||||||||||||||| |||||||||||||| || | | | Sbjct 6167 GCAACCTGCCCACCGGCCACCGCGTGACCATCCGCACCGGCCTGCCGCAGGTCTTCTACC 6226 Query 5857 GCAAGCTGAACGGCGGCGTGCCACCGAGCAAGGCGACCACTGCACAGCTTGACGAGGCCT 5916 ||| | | ||| || || || | |||| |||||| | ||| | ||||| |||| Sbjct 6227 GCATGATCAACCAGGGTGTTCCGACCTCCAAGTCGACCAGCACCCAGGTGGACGAAGCCT 6286 Query 5917 GCGGCATCTTGGAAGCGCGCTCCGAGATCGACAAAGACCTGGCCATGCTGAACGGCAAC- 5975 ||||||| ||||||||||||| | |||||| || ||||| | ||||||||||||| Sbjct 6287 GCGGCATTCTGGAAGCGCGCTCGCACATCGACGTCGAACTGGCGAAGCTGAACGGCAACG 6346 Query 5976 ACCCCGCAGTTCCGACTG-CTGCAGGCCAAGGCTCACCTCGAGGCCATGAACCAGCGCAT 6034 | |||| ||||| ||| | | || | ||| || | ||||||| ||||||||| ||| Sbjct 6347 AAGCCGC-CTTCCGCCTGTCGGAAGACGAAGCCT-TCATCGAGGCGATGAACCAGACCAT 6404 Query 6035 G--CAGCAACAAGTCATCTACGGCGACCGCTCCACC--CCTGAGGC-CTTCGTCGGCCTT 6089 | | || || || ||||||| ||| |||| || | | | ||| | ||||| Sbjct 6405 GGCCGGCGCCATGT--TCTACGGTAACCCGGGCACCGACCCGCGCCAGTTCCTGGGCCT- 6461 Query 6090 TCGCCGCGCTATGACGACGTGCCAACCACTGTCGGCGGCGCAGCCACCAAGGACAACGTG 6149 || | | || | || | | ||| || | ||| | ||| | Sbjct 6462 --GCAAACCCGTTACAGCTCGCTGAGCGCTG-----GGAACGGCC-------AGAACATC 6507 Query 6150 ATCGACGCTGGCGGTACCGGCACCGACAACTCGTCCATCTGGCTGATCGGCTGGGGCGCC 6209 ||||||| || || ||||||||| ||||| | ||||||| ||| | | ||||| | Sbjct 6508 CTCGACGCCGGTGGCACCGGCACCAACAACACCTCCATCTACCTGGTGGTGTGGGGTGAG 6567 Query 6210 AACACCATCCACGGCATCTACCCGAAAGGCTCGCAGGCAGGCCTGATCCACAACGACCTA 6269 |||||| || | || | |||||| || ||| | || |||||| ||| | ||||| Sbjct 6568 AACACCGTCTTCTGCCCGTTCCCGAAGGGTTCGAAAGCTGGCCTGCAGCACCAGGACCTG 6627 Query 6270 GGCGAGATTGACGCGT--TCGATGCCAGCATGAACCGCTTCCGCGC-CTACG-GCGACCA 6325 ||||| | | || || ||| ||| | ||| ||||| || || || ||| | Sbjct 6628 GGCGA-AGAGTCG-GTCCCCGACTCCAACGGCAACTTCTTCCAGGCGCTGCGTGCG--CT 6683 Query 6326 GTACCAATGGAAGGCCGGTATTGCCGTGCACGACTGGCGCTACGCCGTTCGTATCGCAAA 6385 |||||| |||||| ||| | | || | ||||||||||| | ||| || ||||| || Sbjct 6684 GTACCAGTGGAAGAACGGCCTGGTGGTCAAGGACTGGCGCTATGTCGTCCGCATCGCGAA 6743 Query 6386 CATCGACAACAGCGACCTG---ACCAAGAACGCCA-GC-----GCCGGCGC--CGAC--- 6431 |||| || | ||||||| | ||| ||||| || |||| ||| |||| Sbjct 6744 CATCAACGTGACCGACCTGGTCGGCCAGAGCGCCACGCAGGCAGCCGCCGCCGCGACCGC 6803 Query 6432 -ATCATCGACCTGATGACCCAGGCCCTGGA 6460 |||||| ||||||||| || ||| |||| Sbjct 6804 AATCATCAACCTGATGATCCGCGCCATGGA 6833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133115466889062