Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq980070 178 2e-39 seq72283 86.0 9e-12 >seq980070 Length=1613 Score = 178 bits (196), Expect = 2e-39 Identities = 227/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 123072 TGTCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTG 123131 ||||||| ||||| || |||||||| || ||||| ||||| ||||| || || || || | Sbjct 521 TGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAATATCG 462 Query 123132 CCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACT 123191 | || ||||| || |||| |||||| | |||||||||||| ||| ||| || |||| Sbjct 461 CTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGCGACT 402 Query 123192 TCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGC 123251 || | ||||| || || || || |||||||| |||||| |||| |||| || ||| Sbjct 401 TCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGGTCGAGCTGC 342 Query 123252 AGTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTA 123311 || | | |||||| | |||| | || ||| || || || || ||||| Sbjct 341 AGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGATTCGC 282 Query 123312 TCTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTA 123371 | |||||||| | ||| || || ||||| ||||||| ||||| ||||| ||| || | Sbjct 281 TGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGCGATCA 222 Query 123372 AGGCACCGGTGGC 123384 |||| |||||||| Sbjct 221 AGGCCCCGGTGGC 209 Score = 125 bits (138), Expect = 1e-23 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 || || || || || ||||| | || | |||||| || |||||||| ||||||| Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || ||||||||||| |||||||| ||||| ||||| || ||||||||||| || Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTGCACCTGAAGTCGATCATCCATGAACTC 820 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 | |||||||| | || ||||| ||| || ||||| || ||| |||| ||| Sbjct 819 ATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGATC 760 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 ||||| || ||||| || || | || || || |||||| | ||||| | || ||||| Sbjct 759 TGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCG 701 >seq72283 Length=23150 Score = 86.0 bits (94), Expect = 9e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 17661 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 17603 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 17602 CCCCGTCAGTCC 17591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 757433971119600