Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq856519 107 1e-17 seq146241 95.1 8e-14 seq839203 93.3 3e-13 seq70678 91.5 9e-13 seq844687 87.8 1e-11 seq176325 87.8 1e-11 seq64548 86.0 4e-11 >seq856519 Length=10792 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || || || || |||||||| || | || ||||| || |||| Sbjct 8419 ATGCCGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATG 8360 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| ||||||||||| | ||||| || || || ||||||||||| ||| Sbjct 8359 CTGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAA 8300 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 8299 TTGCCTATGGTCTTGACAAGAA 8278 >seq146241 Length=3333 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || ||||| || ||||||||||| | || || || || |||| Sbjct 2502 ATGCTGTTGTAACTGTACCTGCATACTTCAATGATTCTCAGAGGCAGGCTACCAAGGATG 2561 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || | ||||| | ||||| || || || |||||||| || || Sbjct 2562 CTGGTGTCATTGCTGGCATCAATGTCCTCCGTATCATCAACGAGCCAACAGCTGCTGCCA 2621 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 2622 TTGCTTATGGTCTTGACAAGAA 2643 >seq839203 Length=7618 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || || ||||| || ||||| | || ||||| ||||| || Sbjct 916 ACGGAGTCGGAGAACTAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGGCTAGGGT 975 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||||||||| |||||||| || | || ||||| || || || || || Sbjct 976 GCGACCATCCTCAAGTTGCTTGCCAGCAAAGATCAACCGCTGTTGGTCCGG-GGGATGCC 1034 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| ||||||| || || || || | | | || |||| Sbjct 1035 CTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCAA-CCTCAA 1093 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| ||||| |||||||| || Sbjct 1094 GAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTG 1133 >seq70678 Length=6846 Score = 91.5 bits (100), Expect = 9e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||||||||| || || || ||||| || || | |||||| || ||||| || | | Sbjct 4632 TTACTGTTCCGGCGTACTTCAATGACTCACAGAGAACAGCAACAAAGGATGCTGGCCGTA 4691 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 ||||||| || | ||| | || ||||| ||||| ||||| || || | |||||||||| Sbjct 4692 TTGCAGGACTGGAAGTTCTCCGCATTATAAATGAGCCAACTGCTGCATCTCTTGCTTATG 4751 Query 474864 GTCTTGATAAGAA 474876 || |||| ||||| Sbjct 4752 GTTTTGAGAAGAA 4764 >seq844687 Length=8129 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || || || ||||||||||| || |||||| | || || || ||||| || || || Sbjct 3145 GCTGTGATCACAGTTCCAGCATACTTCAATGATGCCCAGCGGCAGGCAACCAAGGACGCT 3086 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || ||||||| || ||| ||||| | | ||||| |||||||| || || || || || Sbjct 3085 GGTCGAATTGCTGGACTTGATGTTCAAAGGATTATCAATGAACCTACTGCTGCTGCTCTG 3026 Query 474857 GCTTATGG 474864 ||||||| Sbjct 3025 TCTTATGG 3018 >seq176325 Length=1574 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || ||||| | | ||| ||||| ||||| |||||||| || || || || Sbjct 191 TTGTAGTCCGCCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGC 132 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || || || |||||||| || |||||| || ||| || || || ||| Sbjct 131 TGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCA 72 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || | || |||| || || || || ||||| ||||||||||| || || Sbjct 71 GATGACTCAACCTCCA-GGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 16 >seq64548 Length=11228 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 |||||| || |||||||||||||| | || ||||| ||||||||||| | || ||||| Sbjct 9999 TCTTGATGGAATTCCTCCTGCTCCGCGTGGTGTTCCCCAAATTGAAGTCAAGTTCGATAT 10058 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGC 476172 |||||| ||||| ||||| |||| |||| Sbjct 10059 TGATGCCAATGGCATTCTGTCTGTTGCTGC 10088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3179047944134348