Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_020489.1 Length=40489 Score E Sequences producing significant alignments: (Bits) Value seq18566 168 2e-37 >seq18566 Length=1918 Score = 168 bits (186), Expect = 2e-37 Identities = 452/681 (66%), Gaps = 35/681 (5%) Strand=Plus/Minus Query 26839 AAGATGCTCGGGCACGGTAGAGACCAGTCGATGCACTCGGCGGCAGCGCGCCACGGCTTG 26898 |||||||| || ||||| | ||||| |||||||| ||||| || | ||| ||| || Sbjct 670 AAGATGCTTGGACACGGCAACGACCAATCGATGCATTCGGCCGCGGTGCGGTGCGGTTTC 611 Query 26899 AGCCTGCCCTTGCG-GACCGCCGGGCTTTTCGGATCTCCATGCGTCGGTGCAGGCCAGAC 26957 ||| | ||| || |||| |||| | || | |||||| | | | |||||| | Sbjct 610 AGCTT-CCCGCGCTTGACCATCGGGTGATCAGGGGCAGCATGCGACTGCTCCGGCCAGGC 552 Query 26958 GATCCGGCGGCCATCGCAGCGCGCCACCAGAAACAGGCGCTTGCGGATCGTAGGGGCGCC 27017 |||| | | ||||| | ||| ||||||| ||||||||||| |||||||| || | | Sbjct 551 GATCGGCAGTCCATCACGGCGAGCCACCATGAACAGGCGCTTTCGGATCGTCGGCGTGTT 492 Query 27018 GAAGTCGCAGGCGCGCAGCTCGCGCCATTCGACGCGATAGCCGCGCTCGCGCAGCTGGCG 27077 | |||| ||||||| |||||| ||||||| |||||| | | ||||||||| Sbjct 491 GTGCTCGCTCGCGCGCAACTCGCGGAATTCGACCTTGTAGCCGTGGCCCTCCAGCTGGCG 432 Query 27078 CACCCACAGCTCAAATGTTTGGCCGGCGAATTCTTTGAT-CGGC------TGGCCGTCCT 27130 || | ||| || |||| ||| ||| | ||| |||| | ||||| || Sbjct 431 AACGAAGCTCTCGAAGGTTTTGCC-GCGCTTAGCCGGATCCGGCTTCCAGTCGCCGTTCT 373 Query 27131 CGCC------CACCGGCCCCCAGGTCGTGAACTCCTCGACGTTTTCGAGAAGGATCACGT 27184 || | || ||| ||||||||| |||||||||||||||| ||||| | |||||| Sbjct 372 CGTCCTGCATCAGCGGGCCCCAGGTCTTGAACTCCTCGACGTTCTCGAGCATGATCAC-- 315 Query 27185 CAGGGCGCTGCGCGCGGGGCAGATCCGCCCAGCGGATCACCACCCACGCGAGATCGCGGA 27244 |||| || || | | |||||||| || ||||| || || |||||| Sbjct 314 ----GCGCGGCTTGC---ACTTTGCTGCCCAGCGCATGGTTACCCAGGCCAGCCCGCGGA 262 Query 27245 TATTGCGGTC-GCGGACGCTTG-CGCCCTTCGCCTTCGAGAAATGCTTGCAGTCCGGCGA 27302 | || || | | ||||| | ||||| ||||| ||| ||||||||||||||||| Sbjct 261 TCTTCTTCTCTACCG--GCTTGCCACCCTTGGCCTTGCTGAAGTGCTTGCAGTCCGGCGA 204 Query 27303 GGCCCATACCATGCCGACCTTGCGGCCCGCGGTCACGGTGGCCGGGTCAACGTCCCAGAT 27362 ||| || | | ||| || || || | ||| || |||||||||| Sbjct 203 CAGCCAGACGAGAGCCACCGGCCGATTGTTCGTGACTTCGATCGGATCTACGTCCCAGA- 145 Query 27363 GTTGCTGTCG---AGATGCAATGTCTCGGGGTGGTTGGCTGCATGCAGCGCCAGCGCCGC 27419 ||| ||| || ||| || | ||||||||| ||||||| ||||| ||| | Sbjct 144 --CGCTCTCGCATAGGTGCTTCGTGTATGGGTGGTTGATGGCATGCATAGCCAGGGCCTC 87 Query 27420 GGCAGAGTGGTTGATGGCGACATCGGGCGAGCGGCCAAGGGCCTGCTCGATGCCGGTCGA 27479 || | |||||||| |||| ||| || |||||| | || ||| | ||||| Sbjct 86 GGGATCATGGTTGATCGCGATGTCGACCGGGCGGCCGAATGCGGCCTCCAGACCGGTGCT 27 Query 27480 GGCGCCGCCGCCTCCGGCAAA 27500 || |||||||| ||||| || Sbjct 26 GGTTCCGCCGCCGCCGGCGAA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126249179412662