Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq957357 87.8 9e-13
seq1980960 86.0 3e-12
>seq957357
Length=1670
Score = 87.8 bits (96), Expect = 9e-13
Identities = 153/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124
||| ||||| || ||||| ||||||||||| || | ||||| |||||||| || ||
Sbjct 1531 ACCCTTTCTCTTGCCTCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAA 1472
Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184
||| ||||||| ||| | || ||| ||||| | |||| | | || || | |
Sbjct 1471 CATAGGAACTATCCCATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACG 1412
Query 26185 AATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--T 26242
||| | |||| || | ||| ||||| ||||| |||| || | ||||| || |
Sbjct 1411 AATGTTGTGAACAGAGACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTT 1352
Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
|| | ||||| | ||||| | ||||||||| |||||||
Sbjct 1351 GAGA--GTATCATAGATTCCCTCGATGCTATCATCTTTCAT 1313
>seq1980960
Length=13069
Score = 86.0 bits (94), Expect = 3e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
|||||||||| || |||||||||||||| || || | |||||| ||||||||||| |
Sbjct 1911 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAGCGTGCAGTGTCATTGAAAACACGTA 1852
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
||| ||||| | |||| | ||| ||| ||||| | | |||| | || || | |
Sbjct 1851 GCATGGGAACAATTCCATTAGAAGTTCCATTTGTTCCACGAATGTAACTGCCAGTAGCCC 1792
Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243
| | |||| || ||| || || ||||| |||| || | ||||| || |
Sbjct 1791 GGACGTTGTGAATTGAAACACCAATCCCTCCAGCTGATTTGCTTATGGAAGCACATTCCG 1732
Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
| | ||||| ||||||| | || ||||| |||||||
Sbjct 1731 AGAGAGTATCATAAATTCCCTCAATACTATCGTCTTTCAT 1692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 246631909158575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |