Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq957357 87.8 9e-13 seq1980960 86.0 3e-12 >seq957357 Length=1670 Score = 87.8 bits (96), Expect = 9e-13 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||| ||||| || ||||| ||||||||||| || | ||||| |||||||| || || Sbjct 1531 ACCCTTTCTCTTGCCTCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAA 1472 Query 26125 CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCT 26184 ||| ||||||| ||| | || ||| ||||| | |||| | | || || | | Sbjct 1471 CATAGGAACTATCCCATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACG 1412 Query 26185 AATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--T 26242 ||| | |||| || | ||| ||||| ||||| |||| || | ||||| || | Sbjct 1411 AATGTTGTGAACAGAGACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTT 1352 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| | ||||| | ||||||||| ||||||| Sbjct 1351 GAGA--GTATCATAGATTCCCTCGATGCTATCATCTTTCAT 1313 >seq1980960 Length=13069 Score = 86.0 bits (94), Expect = 3e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| ||||||||||| | Sbjct 1911 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAGCGTGCAGTGTCATTGAAAACACGTA 1852 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| ||| ||||| | | |||| | || || | | Sbjct 1851 GCATGGGAACAATTCCATTAGAAGTTCCATTTGTTCCACGAATGTAACTGCCAGTAGCCC 1792 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 | | |||| || ||| || || ||||| |||| || | ||||| || | Sbjct 1791 GGACGTTGTGAATTGAAACACCAATCCCTCCAGCTGATTTGCTTATGGAAGCACATTCCG 1732 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | | ||||| ||||||| | || ||||| ||||||| Sbjct 1731 AGAGAGTATCATAAATTCCCTCAATACTATCGTCTTTCAT 1692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 246631909158575