Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq900588 509 2e-139 seq94777 358 8e-94 seq141992 89.7 6e-13 seq542521 84.2 2e-11 >seq900588 Length=4557 Score = 509 bits (564), Expect = 2e-139 Identities = 690/959 (72%), Gaps = 2/959 (0%) Strand=Plus/Minus Query 124040 TCAGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATA 124099 ||| ||| |||| |||||| ||||||||||| ||||| | ||| ||||| ||||||||| Sbjct 3991 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 3932 Query 124100 CCCAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCA 124159 || | ||| || | ||| | | |||| |||| || | | || | | |||| Sbjct 3931 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 3872 Query 124160 ACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATA 124219 || || |||||||| || ||||||||||| | |||||| ||||| || | ||||| | | Sbjct 3871 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAA 3812 Query 124220 GAGGTTAACCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAG 124279 | || ||||| | | ||| ||||| || | || | ||||||||| | | | ||| Sbjct 3811 GCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAG 3752 Query 124280 TTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATG 124339 |||||||| |||||| |||||||| | || ||||| ||||| || || || || || Sbjct 3751 TTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATA 3692 Query 124340 TTGTATGTTTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTT 124399 || || || ||||| ||||| || || || ||||| | || || || | || || Sbjct 3691 TTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTA 3632 Query 124400 GTTTCTCTGATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCT 124459 ||||| ||||| | | ||| || || | ||||||||||| || ||||| || || Sbjct 3631 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 3572 Query 124460 CCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCT 124519 ||||| | || ||||| ||| ||||||||| |||||||| || ||||| |||||||| Sbjct 3571 CCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCC 3512 Query 124520 TGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAAT 124579 ||||| || | |||||||||||||||||| ||||| || | |||||||||||||| || Sbjct 3511 TGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAG 3452 Query 124580 GAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAA 124639 || ||||||| ||||| | ||||| ||||| ||||| | || || |||||| Sbjct 3451 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 3392 Query 124640 TAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCC 124699 || |||||| |||||||||||||| || | | | | |||||||||| | ||| Sbjct 3391 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 3332 Query 124700 ATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTA 124759 || || | | ||||| | |||||| | || | | || ||||||||||||||| Sbjct 3331 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 3272 Query 124760 TACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCG 124819 || ||||| |||||||||| ||| |||||||| |||||||| ||||| | |||||| || Sbjct 3271 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCC 3212 Query 124820 TTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCT 124879 || | |||| || ||||||||||| || ||||| ||||| | |||||||| | Sbjct 3211 GCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAA 3152 Query 124880 ACTGGTTCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA- 124938 || || || | || || || ||||| || ||||| || || || || || | || || Sbjct 3151 ACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAAT 3092 Query 124939 ACATGCTGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 ||| | | ||| || | |||| || ||||| | |||||| ||||| || | |||| Sbjct 3091 ACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAA 3034 >seq94777 Length=2712 Score = 358 bits (396), Expect = 8e-94 Identities = 704/1043 (67%), Gaps = 31/1043 (3%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 2082 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 2023 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 2022 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 1963 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 ||||||||| || || ||||| ||||| | || || || || |||||||| || || | Sbjct 1962 AGTCTCGAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACG 1903 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 | ||| || || | || || | || |||| |||| | ||| |||| || || Sbjct 1902 TAAGTTCAGAGCCAAGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTAC 1843 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 1842 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 1783 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 1782 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 1723 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | | ||| ||| ||| ||| | | || Sbjct 1722 ACGGAAGGTATTTGC---------ACCATCACC------------GTCCTCAAATAGAGT 1684 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | || ||||| |||||||| || ||||| | || | |||| || ||| ||||| Sbjct 1683 GTTTTCTACGGTTGCTCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAAC 1624 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| | Sbjct 1623 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGAA 1564 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || || || |||||||||| || || ||||| Sbjct 1563 TCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGG 1504 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || || | | || || || || | ||||||||| || ||| || || Sbjct 1503 ATAAATAAGGAATACCGAAACAAAAACAGCAATTGGACCAGAGAATGAGATTGCATTATA 1444 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| | || | |||||||| | | |||||||||||| ||| | Sbjct 1443 AGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGC 1384 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | || || | |||||||| |||||||||| || | ||| |||||||| || Sbjct 1383 AAAAGCCCCGTGGAGAGCTACAAAAGTCCATAGACCGCCTAATTGACACCAACGAGTAAA 1324 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTCA 123700 |||||||||||| || ||||| || | || | || | || | | |||| Sbjct 1323 ATCTCCTTGTGCTTCTGGCCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGG---- 1268 Query 123701 CCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATA 123760 |||| || || |||||||| |||||||| || || || | ||| ||| ||| | Sbjct 1267 -CAGGGGTAGAAACTGCTGCGGTTAAGAAATTACAACCTTCCAAATAGGAACTTGCCAAT 1209 Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| |||||||| || || || || || || ||| |||||||| || | | | | Sbjct 1208 CCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAA 1149 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | || || || ||||||||||||| || || ||||| || || | Sbjct 1148 TAAGCACAAGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGT 1089 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 |||||||| || | | |||||| Sbjct 1088 AACCAGTCATCCATAGTATCAAA 1066 >seq141992 Length=6480 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || || ||||||||||| || |||||||| || Sbjct 3820 ACACCAATAGGACCCATGCCAGGACCACCTCCACCATGTGGAATGCAAAATGTCTTGTGA 3761 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || ||||| || |||||||| ||| Sbjct 3760 AGGTTAAGATGGCAAACATCTGCTCCA 3734 >seq542521 Length=235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATAC 123761 |||| || || ||||||| |||||||| || || || | ||||||| | | | | Sbjct 161 CAGGGGTAGAAACTGCTGTGGTTAAGAAATTACATCATTCCAAATATGAACTTTCCAATC 102 Query 123762 CATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGAT 123821 |||| |||||||| || || || || || || ||| |||||||| || | | | || Sbjct 101 CATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAAT 42 Query 123822 ACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTA 123857 | |||||||| | || || || ||||||||||||| Sbjct 41 AAGCACAAGGAAAGAGCAATAGGCCAGACCATCCTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563959633070520