Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq60244 131 2e-25 seq59150 96.9 4e-15 seq52215 91.5 2e-13 seq9471 87.8 2e-12 seq1649514 84.2 3e-11 >seq60244 Length=9325 Score = 131 bits (144), Expect = 2e-25 Identities = 309/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||| | | || || || || || ||||| ||||||||||| || || || Sbjct 908 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 849 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| ||||||||||||| |||||||| ||||| |||||| || || Sbjct 848 CTGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 789 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTC-AAGACTT 65248 || || ||||| || ||||| || ||| || || ||| || ||| || | ||| | Sbjct 788 GCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC-TG--CCTCCTCTACGACAT 732 Query 65249 --TGC---GTAA--TAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTT 65301 ||| | || | || | | | ||| || || ||||| ||||| || Sbjct 731 CCTGCGCGGCAAGCTGGA-CGAGTCCCG----CGTCTTCGAGATCGTCTCCGAGGCCGTG 677 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCT 65361 || ||||||| | |||| ||| ||||| ||||| || ||| |||| |||||| Sbjct 676 GACATTGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGC 617 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 || ||| | ||||||| |||| ||| | || || || ||| | | |||| || Sbjct 616 GACCTCATGAGCCAGTACATCGAGTTCGTGGCAGACCGCCTGCTC-ATGGCGCTGGGCTG 558 Query 65422 CCAC-CCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | || | | ||||| | || || || |||| ||||| ||| || | || Sbjct 557 CAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGG 498 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||| |||||||| |||||||| || || || || Sbjct 497 CAAGACAAACTTCTTCGAGAAGCGCGTCGGCGAGTA 462 >seq59150 Length=4554 Score = 96.9 bits (106), Expect = 4e-15 Identities = 223/334 (67%), Gaps = 14/334 (4%) Strand=Plus/Plus Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644 |||| | || ||||| ||||| ||||||| || || || || ||||||||||||||||| Sbjct 3826 CTCCTCGGTAGCGACGACATAGTCATCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGC 3885 Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTCAAG 177704 || || || ||| ||| |||||||| ||||| ||| |||||| ||||| | Sbjct 3886 CTCGACGTAATCCCCGGCGAAGCCCCAGTCCCTGGCGGCGGAGAGGTTGCCGAG---GAA 3942 Query 177705 GAACT--CTCT-----CTCACCTTTCACAATTTGTTTGACGCCATCAGTAATCTTCTTTG 177757 || || ||| | |||||| || | |||| || || ||||| | Sbjct 3943 GACCTTGGTCTGGAGCCCCACCTT----GATGCGGCCGACGGCACGGGTGATCTTGCGGG 3998 Query 177758 TGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCAT 177817 |||| |||| | || || | || || |||||||||||||| | ||| |||||| Sbjct 3999 TGACGAAGTTCTCGCCGCGGCGTGGCGACTCGTGGTTGAAGAGCACGCCGTTGCAGGCGA 4058 Query 177818 ACATACCATAGGATTCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGC 177877 | | || |||| || ||||| || | | |||||| ||||| | |||| ||| Sbjct 4059 AGAGGCCGTAGGCCTCGCGGTAGTTGACGGTGTACCAGTGCGCGGCGACCTTGGCAACGG 4118 Query 177878 CATAGACGGATCGTGGGTAGAAGGGTGTCTCCTC 177911 | ||| || || |||| ||| || || |||| Sbjct 4119 CGTAGGGTGACCGCGGGTGGAAAGGCGTGGCCTC 4152 >seq52215 Length=397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/207 (71%), Gaps = 16/207 (8%) Strand=Plus/Minus Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 |||| || |||||||| |||||||||||||| | |||| |||||||||||| | | Sbjct 242 ACTTCGTCGAGATGTTCGTTGGTGTGGGTGCAGCACGGGTCCGCGATCTCTTTAA----G 187 Query 175454 CCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAG 175509 | || ||| ||| || || || |||||||||||||| |||| || | || ||| Sbjct 186 CAAGCCGAAACCAAAGCCCCCTGCATCATCTTCATTGATGAGCTTGACGCACTCGGAAAG 127 Query 175510 CAACGC-AGCGCTG---GTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCA 175565 |||| ||| ||| | ||| || | || || ||| | ||||||||| | || || Sbjct 126 --ACGCGAGCACTGAATGCGGTCGGC--GGCAACGAGGAGCGCGAACAAACACTGAACCA 71 Query 175566 ACTACTCACCGAGATGGATGGCTTTGA 175592 || || ||||||||| || ||||| Sbjct 70 GCTTCTGGTCGAGATGGACGGTTTTGA 44 >seq9471 Length=4830 Score = 87.8 bits (96), Expect = 2e-12 Identities = 211/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| || | || ||| || || || ||||| || Sbjct 4456 GGGGCCAAGATCCCCAAGGGATGCCTGCTTGTCGGCCCGCCCGGGACCGGGAAGACGCTG 4397 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||||||| ||| |||| || || | || || ||| || ||| | || | | Sbjct 4396 CTCGCCCGTGCCGTCGCCGGGGAGGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAG 4337 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || || ||||||||| ||||| | || ||||| || | ||| Sbjct 4336 TTCGTCGAGCTCTTCGTCGGCGTGGGTGCCTCCAGGGTGAGGGACCTCTTCGAGAAGGCC 4277 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||| || |||||||| || || || | ||| || Sbjct 4276 AAGGCCAAGGCGCCCTGCATCGTCTTCATCGACGAGATTGACGCCGTCGGGAGGCAGCGT 4217 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || ||| || | || || ||||| || || || ||||| || || |||| Sbjct 4216 GGTGCGGGAATGG-GTG-GGGGGAACGATGAGAGGGAGCAGACCATTAACCAGCTGCTCA 4159 Query 175574 CCGAGATGGATGGCTT 175589 | |||||||| ||||| Sbjct 4158 CGGAGATGGACGGCTT 4143 >seq1649514 Length=255 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 177585 CTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGC 177644 |||| | || ||||| ||||| ||||||| || || || || ||||||||||||||||| Sbjct 114 CTCCTCGGTGGCGACGACATAGTCATCAGGCTTGTCCTGCTGGAGCATGAGCCACATGGC 55 Query 177645 TTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAG 177698 || || || ||| ||| ||||| || ||||| ||| |||||| ||||| Sbjct 54 CTCGACGTAATCCCCGGCGAAGCCCCAATCCCTGGCGGCGGAGAGGTTGCCGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581074442894880