Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq900588 540 3e-149 seq780762 91.5 4e-14 seq678427 84.2 6e-12 seq1984290 82.4 2e-11 >seq900588 Length=4557 Score = 540 bits (598), Expect = 3e-149 Identities = 723/997 (73%), Gaps = 10/997 (1%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 3991 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 3932 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | | ||||||||||||| ||| || ||| | | || Sbjct 3931 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 3872 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || ||||| || || |||||||| ||||| |||||||||||| ||||| | Sbjct 3871 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAA 3812 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCT 40762 | || | ||| || || | || || ||||| ||||||| |||||||| | ||| Sbjct 3811 GCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGA 3753 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 |||||||| ||||||||| || |||| || ||||| ||||| || ||||| || || Sbjct 3752 GTTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAAT 3693 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||||||||||| | || |||||||| || || || | || |||||| |||| || Sbjct 3692 ATTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGT 3633 Query 40883 GGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGC 40939 || |||| || | | |||| || ||||| || ||||||||| || | | Sbjct 3632 AGTTTCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGA 3576 Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 ||| || || || || || || || | ||| |||||||| ||||| || |||||||| || Sbjct 3575 ACCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTC 3516 Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 ||| ||||| |||| ||| |||||||| || ||| |||||||||||||||||||||||| Sbjct 3515 TGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGA 3456 Query 41060 GAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGC 41119 || || ||||| | || |||| ||||| ||||| ||| |||| | ||||| Sbjct 3455 AAAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 3396 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 || ||||| ||| ||||| || | |||||| || | | | ||||||||||| | Sbjct 3395 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 3336 Query 41180 ACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCC 41239 ||| || ||||| || | ||| ||||| | ||||| || | ||| || || || Sbjct 3335 ACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACC 3276 Query 41240 GTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGAT 41299 ||||||| |||||| || | | | |||||||| |||||||| || || | |||||| Sbjct 3275 ATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGAT 3216 Query 41300 TGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCC 41359 || ||| | |||| | ||| ||||| ||||||||||| || || | ||| || || Sbjct 3215 CGCCGCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACC 3156 Query 41360 GGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTAT 41419 ||||| ||||| || || ||||| |||||||| || || || ||||| |||||||| || Sbjct 3155 AGAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAAT 3096 Query 41420 GAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGT 41478 || ||| | || || || | ||| | || ||||| | ||||| ||||| || | || Sbjct 3095 AAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGT 3037 Query 41479 ATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || || || || |||||||| | |||||| || || Sbjct 3036 AAAGACGATTTTCAGTGCTAGTTATCCAGTTGCAGAA 3000 >seq780762 Length=275 Score = 91.5 bits (100), Expect = 4e-14 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 183 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 242 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAA 40616 || || | | ||| | | |||||||||| Sbjct 243 CCAAGGTTAGCACGGTTGATGATATCAGCCCAA 275 >seq678427 Length=242 Score = 84.2 bits (92), Expect = 6e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 ||| ||| ||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 59 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCAT 1 >seq1984290 Length=1936 Score = 82.4 bits (90), Expect = 2e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1877 CTCAACAGCAGCCAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCAT 1936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140156532592134