Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq900588 618 5e-172 seq780762 87.8 2e-12 >seq900588 Length=4557 Score = 618 bits (684), Expect = 5e-172 Identities = 721/972 (74%), Gaps = 6/972 (1%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||||||||| ||||| |||||||| |||||||| Sbjct 3991 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 3932 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCA 67472 ||||| || | ||| | ||| || ||||||||| ||| || ||| ||| Sbjct 3931 CCAAGGTTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCA 3872 Query 67473 ACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATT 67532 || || ||||||||||| |||||||| || |||||||| |||||||| | ||| | Sbjct 3871 ACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAA 3812 Query 67533 GCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAG 67592 |||||||||||||| | || ||||| | ||||| | ||||||||| | | | ||| Sbjct 3811 GCAGTGAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAG 3752 Query 67593 TTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATG 67652 ||||||||| ||||| |||||||| || || || || || ||||||||||| ||||| Sbjct 3751 TTGTTGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATA 3692 Query 67653 TTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTA 67712 || ||||||||||| ||||| || || |||||||| | || || || | |||||| Sbjct 3691 TTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTA 3632 Query 67713 GTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCA 67772 ||||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| Sbjct 3631 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 3572 Query 67773 CCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCT 67832 ||||||||||| ||||| || | ||| |||||||| ||||||||||||||||||||||| Sbjct 3571 CCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCTGCC 3512 Query 67833 TGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAA 67892 ||||| || | ||| |||| ||||||||||| || || | |||||| | ||||| || Sbjct 3511 TGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAG 3452 Query 67893 GAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAG 67952 |||||||| | ||| || | |||||| ||||| || || | || ||||| || Sbjct 3451 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 3392 Query 67953 TATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC- 68011 ||||| ||| ||||||||||||||||| |||||| || ||||||||||| |||||| Sbjct 3391 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 3332 Query 68012 --ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCA 68069 | | | ||| | || | | |||||| | || | || | |||| |||||| Sbjct 3331 ATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCA 3275 Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| Sbjct 3274 TTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATC 3215 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 || ||| |||||| || ||||||||| || || ||||| || || | | ||||| Sbjct 3214 GCCGCAGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCA 3155 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249 | |||||| || | |||||||| ||||| |||||||| || || ||||| || || || Sbjct 3154 GAAACAGGCTCGCGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATA 3095 Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAG 68309 || || | ||| | | ||| ||| |||||||| ||||||||||| || | || Sbjct 3094 AATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAA 3035 Query 68310 ATGCGATTGTCA 68321 | ||||| ||| Sbjct 3034 AGACGATTTTCA 3023 >seq780762 Length=275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| | ||| ||||||||||||||||| ||||| |||||||| |||||||| Sbjct 183 TCAACAGCAGCTAAGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATA 242 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAA 67445 ||||| || | ||| | ||| || |||||| Sbjct 243 CCAAGGTTAGCACGGTTGATGATATCAGCCCAA 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552221448077160