Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq841313 143 8e-29 seq70004 143 8e-29 seq124273 136 1e-26 seq957357 105 2e-17 seq286923 105 2e-17 seq123248 105 2e-17 >seq841313 Length=13740 Score = 143 bits (158), Expect = 8e-29 Identities = 235/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || ||||| |||||| | ||| ||||| |||||| ||| | | | ||| Sbjct 1672 TTCCTCACGGTACCATCATATTTCACCATGATGTCCTCCATAGCCTTCACGAGCCTCCGC 1731 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| ||||| ||| ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 1732 TGGATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCC 1791 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || | ||| || || | || | | ||| |||| || || Sbjct 1792 ATAGCATGGAAGAAAAATTCCTGTGGTGTCAGACCTCGAAGATAAGAGTTCTCCACAAAT 1851 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| ||||| | || || || ||||| |||| || | | || | Sbjct 1852 CCACGGCTTTCGGGGCCGTAGTTATCTTTCGTGAAGTGGGGCAATGTACGATCAACAAAA 1911 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || |||| || ||||| || ||||| ||||||||||| | || | | ||||||||||| Sbjct 1912 CCAAATGGAATCCGCTTGCCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGCGAA 1971 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| | |||||| || ||||| ||| | |||||| Sbjct 1972 ATATTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 2010 >seq70004 Length=6347 Score = 143 bits (158), Expect = 8e-29 Identities = 235/339 (69%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| ||||| |||||| | ||| ||||| |||||| ||| | | | ||| Sbjct 942 TTTCTCACGGTACCATCATATTTTACCATGATGTCCTCCATAGCCTTCACGAGCCTCCGC 1001 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 |||||||| ||||| || ||||| ||||| |||||||| | ||| | | ||||||| Sbjct 1002 TGAATATATCCAGTCTCGGAAGTTTTCACAGCAGTATCAATCAAACCCTCTCTACCACCC 1061 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 |||||||||||||| | || ||| || || | || | ||| |||| ||||| Sbjct 1062 ATAGCATGGAAGAAGAATTCAGTTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACGAAC 1121 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| ||||| |||||| | || ||||| |||| || | || | Sbjct 1122 CCACGGCTTTCGGGGCTGTCGTCGTTTTGCGTGAAGTGGGGCAATGTACGACCAGCAAAA 1181 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || ||||||| | ||| || ||||| ||||||||||| | ||| | ||||||||||| Sbjct 1182 CCAAATGGGATCCTCTTGCCCTCAACATTCTGCTGTCCGACGCAAGCTGTCATCTGCGAA 1241 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| | ||| || || ||||| ||| | |||||| Sbjct 1242 ATATTAATGAAACTACCTTTTGAGCCTGCAGTGACCATA 1280 >seq124273 Length=7979 Score = 136 bits (150), Expect = 1e-26 Identities = 218/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||||||| |||||| ||| | | | || || ||||| || || || ||||| Sbjct 4433 CATAATGTCCTCCATAGCCTTCACGAGCCTCCGTTGTATATATCCCGTCTCGGAGGTTTT 4492 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| | ||| | | ||||||||||||||||||||| | || | || Sbjct 4493 CACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCCTGTGG 4552 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || ||||| ||||||| || ||||| ||||| | ||| Sbjct 4553 TGTCAGACCTCGAAGGTAGGAGTTCTCAACAAACCCACGACTTTCGGGGCCGTAGTCATC 4612 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || || ||||| |||| || | | || | || |||| || ||||| || ||||| Sbjct 4613 TTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCCTCAAC 4672 Query 302805 GTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||||||||||| | || | | |||| ||||||||||| | |||||| || ||||| Sbjct 4673 ATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTGCCTTTTGAGCC 4732 Query 302865 AGCATTTACCATA 302877 ||| | |||||| Sbjct 4733 TGCAGTGACCATA 4745 >seq957357 Length=1670 Score = 105 bits (116), Expect = 2e-17 Identities = 155/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 156050 ACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| || |||||||| || ||||||||||| |||||||| | ||||||||||| || Sbjct 1531 ACCCTTTCTCTTGCCTCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAA 1472 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 |||||||| || |||||||| || ||||| ||||| ||||||| |||| | || Sbjct 1471 CATAGGAACTATCCCATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACG 1412 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 || || |||| | | ||||| || || | |||| || ||| |||||||| Sbjct 1411 AATGTTGTGAACAGAGACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTT 1352 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| | || || || || |||||||| ||| Sbjct 1351 GAGAGTATCATAGATTCCCTCGATGCTATCATCTTTCAT 1313 >seq286923 Length=5580 Score = 105 bits (116), Expect = 2e-17 Identities = 210/305 (69%), Gaps = 16/305 (5%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || |||||||| | ||| ||||| || |||||||||||| |||| ||| Sbjct 3239 GGCAATGAGTCCACACTTCTCACAAACATGCACCCTGTAAGCATCACTCTGGTCAAATAA 3298 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTC 251519 || |||| ||| | ||||| || || | |||||| ||||| | ||||||||| Sbjct 3299 CCTTTCCTTCAGGAA---AAATGCAGCGCCATGAGCAATCATGCAATCCCTCTCCATTTC 3355 Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAAC 251579 || ||||||||||||||||| || | | ||||| || ||||| | || || | Sbjct 3356 TCCAAAACGAAGACCACCATCACGTGAGCGCCCCTCTGCTGGCTGTCTGGTCAGTATCTG 3415 Query 251580 CATAGGAC--CGA--TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCT 251635 | ||||| ||| | || | || ||| |||| ||||||||||| || | || Sbjct 3416 GACAGGACCACGACCTCTAGAGTGAATTTTG----TCATCCACCATATGCTTAAGTCTCT 3471 Query 251636 GGTAGAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTA 251694 ||||| | | ||||| | ||| || | | || | |||| ||| ||||| || | || Sbjct 3472 GGTAGTAAGTTGGACCTAAGAAAATCATTGCAGTCAATTTTCTC-CCAGTATGACCATTG 3530 Query 251695 TACAT 251699 ||||| Sbjct 3531 TACAT 3535 >seq123248 Length=13701 Score = 105 bits (116), Expect = 2e-17 Identities = 161/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||||| ||||||||| ||||| | |||||| | || | | || || | Sbjct 12054 ACCAACAGCATCAAGTTCGTCAATAAAAATGATTGACGGAGCAGCTTCTTTGGC--TTCC 12111 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || || |||||||||| |||||| |||||| ||||||| ||||||||| Sbjct 12112 TTGAACAAATCCCTTACACGGGCTGCTCCTCTTCCAACAAACATTTCAACAAATTCACTT 12171 Query 289147 GCGGATACTTGAATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || || | ||||| || || || || ||||| |||||| ||||||| | Sbjct 12172 GCAGAAACAGAGAAGAATGGAATTCCA---GCCTCTCCTGCAACTGCCTTCGCCAGCAAA 12228 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTA 289249 || || || |||||||| || || | | ||||| ||| | |||| Sbjct 12229 GTTTTCCCGGTTCCAGGAGGGCCAGCAAGCAGAACACCCCTGGGTA 12274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1432633243194637