Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq980070 178 2e-39 >seq980070 Length=1613 Score = 178 bits (196), Expect = 2e-39 Identities = 185/240 (77%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011 || || |||||||| ||||||| ||| | |||||| |||||||||| |||||| |||| Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880 Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || ||||||||||| ||||||||| | ||| ||||| || || ||||||||||| Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTGC-ACCTGAAGTCGATCATCCATGAACT 821 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 | ||||||||||| || ||||||||| |||||||| || || || || | || Sbjct 820 CATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGAT 761 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||| ||||| ||| | || ||| |||| || ||| | ||||| | |||||||| Sbjct 760 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCG 701 Score = 170 bits (188), Expect = 3e-37 Identities = 230/318 (72%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644 ||| |||| || |||||||| ||||| || |||||| | ||| | || ||||| || || Sbjct 525 AAGCTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAAT 466 Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704 ||||| || || || || |||| |||||| | || |||||||| ||| |||||| Sbjct 465 ATCGCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGC 406 Query 99705 GATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGT 99764 || ||| ||||||||||||| || || ||||| || ||||| ||||||||| || Sbjct 405 GACTTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGG-TCGA 347 Query 99765 ACT-CAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGA 99823 || ||| | | || |||| || |||| | |||| | ||||| || ||||| || Sbjct 346 GCTGCAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGA 287 Query 99824 CTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGC 99883 || | |||||||| | |||||| || || || || | |||||||| || || || || Sbjct 286 TTCGCTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGC 227 Query 99884 TATTAAAGCACCGGTGGC 99901 || || || |||||||| Sbjct 226 GATCAAGGCCCCGGTGGC 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698023045958040