Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_021531.1
Length=223989
Score E
Sequences producing significant alignments: (Bits) Value
seq980070 178 2e-39
>seq980070
Length=1613
Score = 178 bits (196), Expect = 2e-39
Identities = 185/240 (77%), Gaps = 2/240 (1%)
Strand=Plus/Minus
Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAA 99011
|| || |||||||| ||||||| ||| | |||||| |||||||||| |||||| ||||
Sbjct 939 GATCGCACCGGTACCGGCACGCGTTCCGTGTTCGGCTACCAGATGCGCTTCAACCTGCAG 880
Query 99012 GAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAACT 99070
|| || ||||||||||| ||||||||| | ||| ||||| || || |||||||||||
Sbjct 879 GACGGCTTCCCGCTGGTGACGACCAAGAAGGTGC-ACCTGAAGTCGATCATCCATGAACT 821
Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130
| ||||||||||| || ||||||||| |||||||| || || || || | ||
Sbjct 820 CATCTGGTTCCTGAACGGTTCGACCAATATCGCCTACCTGAAGGAAAACGGCGTCTCGAT 761
Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190
|||||||| ||||| ||| | || ||| |||| || ||| | ||||| | ||||||||
Sbjct 760 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTGGGCCCGATCTACGGCTACCAGTGGCG 701
Score = 170 bits (188), Expect = 3e-37
Identities = 230/318 (72%), Gaps = 2/318 (1%)
Strand=Plus/Minus
Query 99585 AAGTTGTCTTGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAAC 99644
||| |||| || |||||||| ||||| || |||||| | ||| | || ||||| || ||
Sbjct 525 AAGCTGTCCTGCCAGCTCTACCAGCGCAGCGCCGACATCTTCCTCGGCGTGCCCTTCAAT 466
Query 99645 ATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAGGCGAATATGGCGGTGGGC 99704
||||| || || || || |||| |||||| | || |||||||| ||| ||||||
Sbjct 465 ATCGCTTCCTACGCCCTGCTGACCCACATGATGGCCCAGCAGGCCGGCCTGGAAGTGGGC 406
Query 99705 GATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGCACGT 99764
|| ||| ||||||||||||| || || ||||| || ||||| ||||||||| ||
Sbjct 405 GACTTCATCTGGACCGGCGGCGACTGCCACCTGTACTCGAACCACATGGAACAGG-TCGA 347
Query 99765 ACT-CAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCCGGA 99823
|| ||| | | || |||| || |||| | |||| | ||||| || ||||| ||
Sbjct 346 GCTGCAGCTCGCGCGCGAAGAGCGTCCGCTGCCCAGGCTGGTCATCAAGCGCAAGCCCGA 287
Query 99824 CTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCCGGC 99883
|| | |||||||| | |||||| || || || || | |||||||| || || || ||
Sbjct 286 TTCGCTGTTCGACTACAGGTTCGACGACTTCGAGATGGTCGGCTACGATCCGCATCCCGC 227
Query 99884 TATTAAAGCACCGGTGGC 99901
|| || || ||||||||
Sbjct 226 GATCAAGGCCCCGGTGGC 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 698023045958040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |