Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021558.1 Length=37644 Score E Sequences producing significant alignments: (Bits) Value seq50962 143 6e-30 seq835682 100 7e-17 >seq50962 Length=281 Score = 143 bits (158), Expect = 6e-30 Identities = 140/179 (78%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 15434 ATCGTGTATTCTAAGGTTTGGGAAAACCTCTTTGAAtttttttGAGTAATGGGAATAGTG 15493 ||||||||||| || || ||||| | ||||||||| ||||| |||||| || ||||| Sbjct 4 ATCGTGTATTCGCAGCTTCGGGAATATCTCTTTGAACTTTTTATGGTAATGCGAGTAGTG 63 Query 15494 GTATGGCGCTAGCCCGCCAAACACAAATAATTGATCTGTGAATCCGTATATCTTTTCTGC 15553 ||| || | |||||| || |||||| || | | || |||||||||| || |||| ||| Sbjct 64 GTACGGTGTTAGCCCACCGAACACATATCAATCGTCATTGAATCCGTAGATTTTTTGTGC 123 Query 15554 GGATTC-TTTTTTATCTCTTTCAACATATCTGCAATAAATTGAGGGAATGGTACATAAC 15611 || ||| |||||||||||||||| ||| || || ||||| | ||||| || ||| ||| Sbjct 124 GGGTTCTTTTTTTATCTCTTTCAGCATGTCGGCGATAAAATTGGGGAAGGGGACAAAAC 182 >seq835682 Length=203 Score = 100 bits (110), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 15256 TGTGATACCGATATGATACCGATCAA---TCAAATACGCTCATTATTTCTTGCTTTCTCT 15312 ||||||||||| |||||||| ||| |||||||||||||| | || |||||||| | Sbjct 114 TGTGATACCGAAATGATACCATTCAGCTCTCAAATACGCTCATGACCTCGTGCTTTCTTT 55 Query 15313 CAGTGTAAAGATGGCCATAAGTATTAGCTGTCTGCTTGATATCGTCGTGGCGCA 15366 | | |||||||||||||| || || || || || || |||||||| ||||||| Sbjct 54 CGATATAAAGATGGCCATAGGTGTTTGCGGTTTGTTTAATATCGTCATGGCGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117369821289772