Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq900588 533 2e-146 seq94777 333 3e-86 seq174834 131 2e-25 seq542521 96.9 4e-15 >seq900588 Length=4557 Score = 533 bits (590), Expect = 2e-146 Identities = 710/984 (72%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| ||||| | ||| | || ||||| ||||| || |||||||| Sbjct 3009 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 3067 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 3068 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 3127 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 3128 TATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 3187 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 ||||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 3188 TGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 3247 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||||| Sbjct 3248 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 3307 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 3308 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 3367 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 3368 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 3427 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | || || | ||||| || || |||||||||||||| |||| ||||| ||||| Sbjct 3428 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 3487 Query 72723 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 72782 |||||||| ||| | || ||||| ||||| |||||||| || ||||| || ||||| || Sbjct 3488 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACAT 3547 Query 72783 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGT 72842 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 3548 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 3607 Query 72843 TACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTT 72902 || || | | ||||| || || || || || || | || | || || || || Sbjct 3608 AACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATT 3667 Query 72903 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 72962 || ||||| ||||| || ||||| ||||| ||||||||||| || || || ||||||| Sbjct 3668 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAAT 3727 Query 72963 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 73022 |||||| ||||| ||||||||||||||||| |||||||||||| | |||| | || Sbjct 3728 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 3787 Query 73023 TGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGG 73082 |||||| | | ||||| || | | ||||| |||| ||||| |||||||| || || Sbjct 3788 TGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGG 3847 Query 73083 ATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGA 73142 ||||| ||||||||||| || || ||| | || || | || |||| || Sbjct 3848 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGA 3907 Query 73143 TGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTT 73202 | | | ||| | || |||||||| |||||||| ||||| ||| | ||||| |||||||| Sbjct 3908 TATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 3967 Query 73203 CCCACTAGACCTAGCATCTGCTGA 73226 ||| |||||| |||| ||| ||| Sbjct 3968 CCCTCTAGACTTAGCTGCTGTTGA 3991 >seq94777 Length=2712 Score = 333 bits (368), Expect = 3e-86 Identities = 687/1026 (67%), Gaps = 21/1026 (2%) Strand=Plus/Plus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| || || |||||||| || | ||||||||||| || || || || Sbjct 1078 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 1137 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 ||||||||||| | || | || |||||||| ||| || ||||| || || || ||| Sbjct 1138 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 1197 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | ||| || ||| | || || ||||| ||||| |||||||| Sbjct 1198 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAGTT 1257 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 || || |||| || | | | || | | ||| | || ||||| ||||| |||||| Sbjct 1258 TCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACAA 1317 Query 73616 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 73675 |||||| || || |||| ||||||||| || ||||||| |||||||| | || || Sbjct 1318 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGG 1377 Query 73676 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 73735 | |||| ||| |||||||||||| | | || ||||| |||| | |||| | Sbjct 1378 GCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTG 1437 Query 73736 CGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTTCTA 73795 || ||||| || ||| | | || || | || || || || | || || Sbjct 1438 CGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCGGTATTCCTT 1497 Query 73796 ATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 73855 || ||||| | || || | |||||||||| || || || || || ||||| || Sbjct 1498 ATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATA 1557 Query 73856 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 73915 ||||| | || | ||| | || || || || ||| || | || |||||||||||| Sbjct 1558 TTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 1617 Query 73916 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 73975 ||||| || || || || | || | || | ||||| || || ||||| ||||| ||| Sbjct 1618 ATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTA 1677 Query 73976 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 74035 | ||||| | | ||| | || ||| ||| | | || Sbjct 1678 GAAAACACTCTATTTGAGG------------ACGGTGATGGT---------GCAAATACC 1716 Query 74036 TTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGA 74095 ||| | || || | || || || | ||||| |||||| ||| | ||||||||| | Sbjct 1717 TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGC 1776 Query 74096 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 74155 || ||||| || || |||||| | || ||||| || ||| | | ||||| ||| ||||| Sbjct 1777 TTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 1836 Query 74156 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTT 74215 | || ||||| |||| ||| | |||| |||| || | || || | || || Sbjct 1837 CTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTG 1896 Query 74216 AACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 74275 ||| | | || || |||||||| || || || || | ||||| ||||| || || || Sbjct 1897 AACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTC 1956 Query 74276 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 74335 || || |||||||| || || |||||| | || || ||||| | || |||||| || || Sbjct 1957 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCT 2016 Query 74336 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 74395 ||||| || ||||| || || | ||||| || || || | ||||| || ||||| Sbjct 2017 CAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCT 2076 Query 74396 CTATAA 74401 || ||| Sbjct 2077 CTTTAA 2082 >seq174834 Length=1002 Score = 131 bits (144), Expect = 2e-25 Identities = 409/625 (65%), Gaps = 9/625 (1%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| |||||| || | |||||| | || | ||||||| ||| || || || || Sbjct 623 GATGACTGGTTACGAAGGGGCCGTTTCATTTTTGTAGGATGGTATGGCCTATTGCTCTTT 564 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA--GGAACTACTTTCGTGACCTCAT 73493 |||| |||||| | | | || |||||||| || ||||| |||| || || || | Sbjct 563 CCTTATGCTTATTTCTCTTTAGG-GGTTGGTTTTTACAGGAACAACTTATGTAACTTCTT 505 Query 73494 GGTACACACATGGTATTGCATCCTCATATCTT-GAGGGAGCAAATTTTTTAACTGCAGCA 73552 ||| || ||||| | ||| || ||| | |||| | || ||| ||||| || || Sbjct 504 TGTATACTCATGGACTGGCAAGTTCCTATTTGCGAGGTTGTAA-TTTCTTAACAGCGACA 446 Query 73553 GTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCA 73612 | || || || || | | | || | | ||| | || ||||| ||||| ||| Sbjct 445 ATTTCTACCTTTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCA 386 Query 73613 CAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACAT 73672 || | |||| || || |||| ||||||||| || ||||||| ||||||||| | || Sbjct 385 CATGTAGATTTTAGTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCACTCCAC 326 Query 73673 GGAGTCTTTGGACTCATAGGTTTCATGCTTAGAC-AGTTTGAGATTGCAGGACTTGTTGG 73731 || | |||| ||| ||||| |||||| ||| || | |||| ||| | |||| Sbjct 325 GGGCT-TTTGCACTAATAGGGTTCATG-TTACACCAACTTGAACGTGCTCGGTCTGTTCA 268 Query 73732 GATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTT 73791 | ||| || ||| | | || || | | || || | || | || Sbjct 267 ATTGNNNNNTTATAATGCAATCTCATTCTCTGGTCTAATTGCTATTTTTGTTTCTGTATT 208 Query 73792 TCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGC 73851 ||| | ||||| | || || || |||||||||| ||||| || ||||| ||||| Sbjct 207 TCTTAGTTATCCACTCGG-CAATATGGTTGGTTCTTTGCACCGAGTTTTGGTGTAGCAGC 149 Query 73852 AATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 73911 ||| ||||| | || | ||| | || || || || ||| || | |||| |||||| Sbjct 148 AATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAATCTATTTCA 89 Query 73912 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 73971 ||||||||| | || || || | || | || || ||||| | || ||||| |||| Sbjct 88 TATGATGGGATTTGCCGGAGTATTAGGCGTGGCTTTTCTATGCACTATTCATGGAGCAAA 29 Query 73972 AGTACAGAACACATTGTATGAAGAC 73996 |||| ||||| | | ||| ||| Sbjct 28 CATACAAAACACTCTATTTGAGGAC 4 >seq542521 Length=235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 73412 GGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA 73471 ||||||||||| || || || || ||||||||||| | || | || |||||||| | Sbjct 8 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACA 67 Query 73472 GGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGA 73531 || || ||||| || || || ||||| || ||||| | | | |||||| | || || Sbjct 68 GGGACAACTTTTGTAACTTCTTGGTATACCCATGGATTGGAAAGTTCATATTTGGAATGA 127 Query 73532 GCAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG 73591 ||||| ||||| ||||||| || || |||| || | | | || | | ||| Sbjct 128 TGTAATTTCTTAACCACAGCAGTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTG 187 Query 73592 TTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAA 73639 | || ||||| ||||| ||| |||| ||| || || |||| |||| Sbjct 188 CTACTATGGGGGCCAGAAGCATAAGGGGATTTTACTCGTTGGTGTCAA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557993917171080