Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_021784.1
Length=38099
Score E
Sequences producing significant alignments: (Bits) Value
seq29471 125 2e-24
>seq29471
Length=369
Score = 125 bits (138), Expect = 2e-24
Identities = 185/260 (71%), Gaps = 4/260 (2%)
Strand=Plus/Plus
Query 33789 TTTGCGGATGGTTGGGAGGATCTCATCGAAGACCCAGCGTTCAAACTCTTCCGCCTTCTT 33848
||||||||||| || | | |||||| || ||||| |||||| | ||| ||||| |
Sbjct 104 TTTGCGGATGGAGGGCAAAACCTCATCAAACACCCAACGTTCATAACGTTCTGCCTTTTC 163
Query 33849 TTTTATTTCTAAATTTTTACTTTGATCAGCCGCCTTGATTATTAATCGGTATATATCTCC 33908
||| || || || || |||||||| ||||| || | || || | ||| ||||| ||
Sbjct 164 TTTGATCGCTGGGTTCTTGCTTTGATCTGCCGCTTTCACGATCAACCTGTAGATATCGCC 223
Query 33909 TTCTGGAATCACTCTCACCGTTTGTTCTCCCCCGTTAGTAGGGATGCGGTAAGTTACCGC 33968
||||||||| || | || |||||||| || | ||| ||| |||||| |||||||
Sbjct 224 TTCTGGAATGACCTTGACTTCCTGTTCTCCGCCTTCCGTAAGGACACGGTAACTTACCGC 283
Query 33969 CCCCTTGCA--GTGGGTTGAAATTGCTTCATGTGGTCTCATGTACCCTAATGCTTTCGCA 34026
||||||||| ||| | ||| | ||||| | ||| | | || || | | || |||
Sbjct 284 CCCCTTGCAATGTGCGGTGACA--GCTTCGTATGGCCGCGCATATCCAAGAGACTTTGCA 341
Query 34027 ACGTCATTACCCACAGCGTA 34046
|||||||| || || || ||
Sbjct 342 ACGTCATTTCCGACCGCATA 361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118789894381482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |