Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021784.1 Length=38099 Score E Sequences producing significant alignments: (Bits) Value seq29471 125 2e-24 >seq29471 Length=369 Score = 125 bits (138), Expect = 2e-24 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 33789 TTTGCGGATGGTTGGGAGGATCTCATCGAAGACCCAGCGTTCAAACTCTTCCGCCTTCTT 33848 ||||||||||| || | | |||||| || ||||| |||||| | ||| ||||| | Sbjct 104 TTTGCGGATGGAGGGCAAAACCTCATCAAACACCCAACGTTCATAACGTTCTGCCTTTTC 163 Query 33849 TTTTATTTCTAAATTTTTACTTTGATCAGCCGCCTTGATTATTAATCGGTATATATCTCC 33908 ||| || || || || |||||||| ||||| || | || || | ||| ||||| || Sbjct 164 TTTGATCGCTGGGTTCTTGCTTTGATCTGCCGCTTTCACGATCAACCTGTAGATATCGCC 223 Query 33909 TTCTGGAATCACTCTCACCGTTTGTTCTCCCCCGTTAGTAGGGATGCGGTAAGTTACCGC 33968 ||||||||| || | || |||||||| || | ||| ||| |||||| ||||||| Sbjct 224 TTCTGGAATGACCTTGACTTCCTGTTCTCCGCCTTCCGTAAGGACACGGTAACTTACCGC 283 Query 33969 CCCCTTGCA--GTGGGTTGAAATTGCTTCATGTGGTCTCATGTACCCTAATGCTTTCGCA 34026 ||||||||| ||| | ||| | ||||| | ||| | | || || | | || ||| Sbjct 284 CCCCTTGCAATGTGCGGTGACA--GCTTCGTATGGCCGCGCATATCCAAGAGACTTTGCA 341 Query 34027 ACGTCATTACCCACAGCGTA 34046 |||||||| || || || || Sbjct 342 ACGTCATTTCCGACCGCATA 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118789894381482