Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq30681 161 3e-35 >seq30681 Length=360 Score = 161 bits (178), Expect = 3e-35 Identities = 187/252 (74%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 9016 CATTACCAGTAAGTACGGGCGTCACAAGCTTGCCAGCGACGGTACCCGCTTTGGTCCCGG 9075 ||||||||| |||||||| || ||||||||||||| ||||| || |||||| || || Sbjct 48 CATTACCAGCAAGTACGGCCGGCACAAGCTTGCCAATGACGGCACGAACTTTGGCCCAGG 107 Query 9076 TCAGGCGATTGTCACCCCGGCGGTAATCAAAGGGGAACTGCTGGCAACCTACCGTCAGCT 9135 ||||| |||||||| ||| || ||| || || || | || |||| | |||| Sbjct 108 CCAGGCCATTGTCACGCCGAACGTGATCCGGGGCGAGTTGATTGCCGCCTATGGCGAGCT 167 Query 9136 TGAGCGTGCGGGGATCGTGGAAAACTACGAACTGTTTAAGCAGTACCTGGTTGTGGAGCG 9195 |||||||| || | ||||| ||| ||| |||| ||| ||||| | |||||||| Sbjct 168 GGAGCGTGCCGGTTTGGTGGAGAACGCAGAAATGTTCAAGGCCAACCTGATCGTGGAGCG 227 Query 9196 TGATGCCAGCGATCCGAACCGCCTGAACACGCTGTTCCCGCCTGACTATGTTAACCAGTT 9255 ||| | ||| | |||||||||||||||| ||||||||||| || || || ||||| Sbjct 228 TGACCCGAGCAACCCGAACCGCCTGAACATCCTGTTCCCGCCGGATCTGGTGAATCAGTT 287 Query 9256 GCGTGTTTTTGC 9267 ||| || ||||| Sbjct 288 GCGCGTGTTTGC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129326524617994