Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq138792 91.5 1e-13 seq878454 86.0 5e-12 >seq138792 Length=3226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | || ||||| ||||| || | || |||| || Sbjct 79 ATGCAAATCTTTGTAAAGACCCTCACGGGCAAGACCATCACATTGGAGGTGGAGTCTTCG 138 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||| ||||| |||||| | ||| ||| || Sbjct 139 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 198 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || ||||||| |||||| Sbjct 199 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAAC 258 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || || || | ||| ||||| Sbjct 259 ATTCAGAAGGAGTCCACCCTTCACTTGGTG 288 >seq878454 Length=5435 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||| ||| | || |||| | Sbjct 834 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 893 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 894 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 953 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | ||| || || ||||| ||||||| | | || |||| ||||||||| Sbjct 954 CAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAAC 1013 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| ||||| | | ||||| || || Sbjct 1014 ATCCAGAAGGAGTCCACCCTTCACCTGGTGCTCCGCCTGCGTGGTGG 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402386626573193