Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_022085.1 Length=76483 Score E Sequences producing significant alignments: (Bits) Value seq833769 107 9e-19 >seq833769 Length=269 Score = 107 bits (118), Expect = 9e-19 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 58831 CGAGATGTGGGAGCAATGTCTGCGGGTCCTCAAGCCCGGTGGGCACCTGCTCGCCTTCGG 58890 ||| || |||| ||| || ||||| || || ||||| || || || || || ||||||| Sbjct 220 CGATATCTGGGCGCAGTGCCTGCGCGTACTGAAGCCTGGCGGCCATCTACTGGCCTTCGC 161 Query 58891 CGGCTCCCGCACCTGGCACCGGCTCGC-GTCGGCCATCGAGGACGCGGGCTTCGAGATTC 58949 ||| | |||||| ||| || | || || || |||||||| ||||| |||||||| | Sbjct 160 AGGCACGCGCACCCAGCATCGCATGGCCGTTCGC-ATCGAGGATGCGGGTTTCGAGATCC 102 Query 58950 GTGACTCCATCGCCTGGCTCTACGGCAGCGGATTCCCGAAGTCGCTCGACG 59000 | ||| ||||||||| |||||||| || ||||||||||| | | ||| Sbjct 101 GCGACATGATCGCCTGGGTCTACGGCTCGGGCTTCCCGAAGTCACACAACG 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238425920502284