Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq828397 98.7 2e-15 seq836995 86.0 1e-11 seq50339 86.0 1e-11 >seq828397 Length=220 Score = 98.7 bits (108), Expect = 2e-15 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 157 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 216 Query 120288 CCTG 120291 |||| Sbjct 217 CCTG 220 >seq836995 Length=233 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 247027 AGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCGCGATGCGTTCGCGCATGCCATCCG 247086 |||||||||||||||| || | || || || || || |||||||| ||||| || || | Sbjct 1 AGTTCATGCTGCGATGATGATTGCGAGCCACCTCGGCAATGCGTTCACGCATTCCGTCTG 60 Query 247087 GCAAACGCACGACAAACTTGTCGGCGCTGCGGCTG 247121 ||| ||| |||||||||||||| || | |||||| Sbjct 61 GCAGACGTACGACAAACTTGTCAGCCGTACGGCTG 95 >seq50339 Length=262 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 120227 TGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGAT 120286 ||||||||||||||| |||||||||| ||||||||||||||| ||| |||||| | Sbjct 59 TGCCGGTATAGCTCAATTGGTAGAGCACCTGACTTGTAATCAGGGGGTTGTGGGTTCAAG 118 Query 120287 CCCTGATGCCGGCACCATATTCTCTGGAGATA 120318 ||| ||||||||||| | || ||||||| Sbjct 119 TCCTATTGCCGGCACCACTTACTGGGGAGATA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804464633192040