Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq71034 221 3e-53 seq835057 123 7e-24 seq980716 118 3e-22 seq56478 118 3e-22 seq32369 105 2e-18 seq7353 102 2e-17 seq30077 100 8e-17 seq138243 91.5 4e-14 >seq71034 Length=3563 Score = 221 bits (244), Expect = 3e-53 Identities = 269/367 (73%), Gaps = 0/367 (0%) Strand=Plus/Plus Query 37150 CACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGAC 37209 ||||||||| | |||||||| || ||||| || || || ||| ||||| || || Sbjct 2309 CACTTCGGCAAGGATGTGCTGGTGACGCGCAAGGGCGCGGTATCGGCGCGCGAAGGGGAG 2368 Query 37210 CTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAAT 37269 || |||||||| || || |||||||| |||||| | ||||| ||||||||||| ||| Sbjct 2369 CTCGGCATCATTCCGGGATCGATGGGGGCGAAGAGTTATATCGTGCGCGGCAAGGGCAAT 2428 Query 37270 TCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGCA 37329 |||| ||| | ||||||||||| ||||| || | |||||||| ||||||| Sbjct 2429 GCCGAGAGTTTCAACAGCTGCAGCCACGGCGCCGGCCGCACCATGAGCCGCACCGAAGCC 2488 Query 37330 AAACGCCGGTTCACAGTCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAA 37389 || ||||| | | ||||| || || | ||| ||| |||| ||||||||||||| Sbjct 2489 AAGCGCCGCTATTCGGTCGACGACCAGGTCAAGGCGACCGAAGGCGTCGAGTGCCGCAAG 2548 Query 37390 GATGCCGAAGTGATCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCC 37449 || | | ||||||||||||| || ||| |||||||||||||| || || ||| Sbjct 2549 GACGAAGGCGTGATCGACGAGATCCCGATGGCCTACAAGGACATCGACGCCGTGATGCAG 2608 Query 37450 GCGCAATCCGCCCTGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGT 37509 ||||| || |||||| || | |||||||||||| || ||||| ||||| ||||| Sbjct 2609 GCGCAGAGCGACCTGGTCGAAGTGGTGCACACGCTGAAGCAGGTCGTGTGCGTAAAGGGG 2668 Query 37510 TGAGGAT 37516 |||| || Sbjct 2669 TGAGCAT 2675 >seq835057 Length=261 Score = 123 bits (136), Expect = 7e-24 Identities = 181/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 15282 GCGTGCGCCGCACCGCCGACATCATCAACGACAGCATCCTGGTGAACCACCTGTGGGCCG 15341 ||||| ||||| ||||||||||| |||||| || || ||| |||||||||| Sbjct 1 GCGTGGTGCGCACGGCCGACATCATTGCTGACAGCCTCGAGGCCGCCCATCTGTGGGCCG 60 Query 15342 TGGATCGCGGCATCACCAAGCAGTACATCGAAGACGTGGTGGAAGGCGTGAACGCCTACC 15401 | || |||||||||| |||| ||| |||| |||||| || ||||| ||||||| || Sbjct 61 TCGACCGCGGCATCAGCAAGACCTACGTCGACGACGTGCGCGAGGGCGTCAACGCCTTCC 120 Query 15402 TGCGCCACCTGGTCAGCATCGGCGCCATCCTGGGCGGCACCTGCTGGGCCGACCCTGACG 15461 ||||| |||| | | ||||| ||||| ||||||| ||||||| |||||| || Sbjct 121 TGCGCGGCCTGAAGACCCAGGGCGCGATCCTCGGCGGCAACTGCTGGATCGACCCGGAAC 180 Query 15462 TGAACACGCCCGACCAGATCGCGCAGGGTAAGGTATACTTCGATTTCGATTTTACCGCTG 15521 ||||| | | ||| | || ||||| | | || || ||||| || ||| | Sbjct 181 TGAACGCAGCGGACAGCGTGGCCCAGGGCCGCTTCTTCTGGGACTTCGACTTCACCCCGA 240 Query 15522 TCTATCCGGCTGAGCA 15537 ||| |||| |||||| Sbjct 241 CCTACCCGGGTGAGCA 256 >seq980716 Length=488 Score = 118 bits (130), Expect = 3e-22 Identities = 184/259 (71%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 35776 TCGACCCGACCAACAAGGACAGCATCAG-CAGCGCCATTGGCCACTGGATGGTCGAGCTT 35834 |||| ||| |||||||||||||||||| ||| | ||| | | ||||| || ||||| Sbjct 285 TCGATCCGGCCAACAAGGACAGCATCAAACAG-GTCATCTCCAAGTGGATCGTGGAGCTG 227 Query 35835 GGCGAGCTGGACGGCACCTT---TCGCAAGGCCGACATTGCCAAGCTGAAGGCGTTTATC 35891 ||||| | |||| ||| || ||||| ||||||| || ||||||| |||| ||| Sbjct 226 GGCGAAGTCGACGCCACATTCCGTCGCA---CCGACATCGCTGCGCTGAAGTCGTTCATC 170 Query 35892 AGTCAGGACGTGGACATGCTGCGCCGGCCGTATGACCGGCTGGAATCGAGGTATCAGCGC 35951 | | ||| | | ||||| ||||||| || |||||| | ||| ||| Sbjct 169 TCGCGCAGCCACGACGAGATCCGCCGCCCGTATGCGCGCACGGAATCCCGCTATGCGCGG 110 Query 35952 CGAACCGTGTTCTTTGCCAGCGTGAACCCTGAACGCTTCCTGGCCGACGAAACCGGCAAC 36011 || ||| | | |||||||| || ||| |||||||||||| ||| | ||||||||| Sbjct 109 CGCACCATCCTGTTTGCCAGTGTCAACGACGAACGCTTCCTGCGCGATGCCACCGGCAAC 50 Query 36012 GTGCGCTGGTGGACCGTGC 36030 |||||||||||||||| Sbjct 49 ACCCGCTGGTGGACCGTGC 31 >seq56478 Length=247 Score = 118 bits (130), Expect = 3e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 37141 AAAGAAAATCACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGC 37200 || ||| | ||||||||| |||||||||| || ||||| || || || || ||| Sbjct 190 AAGGAACACCACTTCGGCAAGGACGTGCTGGTGACGCGCAAGGGCGCCGTGTCCGCGCGC 131 Query 37201 GAGGGCGACCTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGGC 37260 |||||||| ||||| ||||| || || |||||||| |||||| |||||||| || || Sbjct 130 GAGGGCGAGCTGGGTATCATTCCGGGTTCGATGGGCGCGAAGAGCTTCATCGTGCGTGGT 71 Query 37261 AAGGGAAATTCCGAATCGTTCTGCTCTTGCAGCCACGGTGCCGGTCGAATGATGAGCCGG 37320 || || ||| | || ||| | ||||||||||| ||||| || | ||||||||| Sbjct 70 AAAGGGAATCCGGAGAGCTTCCACAGCTGCAGCCACGGCGCCGGCCGCACGATGAGCCGC 11 Query 37321 GCCGAAGC 37328 | ||||| Sbjct 10 ACGGAAGC 3 >seq32369 Length=360 Score = 105 bits (116), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 15082 CGGCTTCTGGTGGTCGCCGTCCAACCAGAACATCAACGGCATCACTGGCACCAGCCGGCC 15141 ||||| |||| ||||||||||||| || | || |||||||| ||||| ||||||| Sbjct 238 CGGCTACTGGGCGTCGCCGTCCAACAAGGAATTCGTTGGCATCACCGGCACAGGCCGGCC 179 Query 15142 TATCGACT-TCACGCTGGGCGATTCCAGCTCGCGCGCCAACCTGCTGAACGAAGCAAAGG 15200 ||||| | || || |||| | || ||||| |||| ||| ||| | || Sbjct 178 CATCGAGTATCTCGACAA-CGATCTGACCTGCCGCGCGAACCCGCTCAACTAGGCCCGCA 120 Query 15201 TGGCGACCATCATTCGCGAGGACGGTTTCCGCCTGTGGGGCAACCGCACCCTGTCGAGCG 15260 | || |||||||||||||| | || | ||||||||||||||| ||||| |||||| || Sbjct 119 TCGCCACCATCATTCGCGATGGTGGCTACCGCCTGTGGGGCAATCGCACGTTGTCGACCG 60 Query 15261 ATCAAAAGTGGGCGTTCCT---GTGCGTGCG 15288 || || ||| ||||| | | ||||||| Sbjct 59 ATTCGAAATGGTCGTTCGTCACGCGCGTGCG 29 >seq7353 Length=217 Score = 102 bits (112), Expect = 2e-17 Identities = 123/166 (74%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| ||||| ||||| |||||||| ||| | ||||||||||||||||| ||| | Sbjct 167 TGTCGACCACGATTTCAGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGG 111 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 | ||||||||||| ||| | | || |||||||| ||||| || || |||| Sbjct 110 TTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCT 51 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTTC 23612 | || ||||||||||| | | || |||||||||||||| || || Sbjct 50 CTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTC 5 >seq30077 Length=415 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 326 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 385 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 386 CAGCTGAGCTACGGG 400 >seq138243 Length=1642 Score = 91.5 bits (100), Expect = 4e-14 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 23547 CAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGT 23606 ||| |||| |||| | || || |||| ||||||||| || ||||||||||||||| Sbjct 231 CAGGTACTGGCCGACGATTTCAGCGAGACGGCCGAAGAAGGAGATGCGGTGCCATTCGGT 290 Query 23607 CTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGAT 23666 | ||| || |||||||||| | |||||| | | | ||| ||||||| ||| Sbjct 291 CAGTTCTTTCTGCTCGCCGGTGTTGCGGTCCTTGGATTTGTACGAGGTGGCCACTGCGAT 350 Query 23667 GTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTC 23711 |||| || ||| |||||| | ||| |||||| | |||||| || Sbjct 351 GTTGGCGATGGCGTCGCCGCTCGGCATGTAGCGGATTTCCGGATC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135846376680812