Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq980325 127 2e-24 seq1991079 111 1e-19 seq221428 105 5e-18 seq622719 98.7 7e-16 seq362679 91.5 1e-13 >seq980325 Length=977 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||||| ||||| || || || ||||| || ||||||| ||||||| | Sbjct 763 CGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGACCA 822 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | |||| | ||||||||||| ||||| ||||| ||| Sbjct 823 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTG 882 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | |||||||| || || || ||||| || Sbjct 883 TCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAGAGTGATG 942 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | ||| || || || |||||||| Sbjct 943 GTCTTCCCAGTCAGGGTCTTGACGAAGATCTGCAT 977 >seq1991079 Length=1418 Score = 111 bits (122), Expect = 1e-19 Identities = 155/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| ||||| || || || |||||||| ||||| | |||||| Sbjct 1219 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCTAGGGTGCGGCC 1160 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || | | |||| ||||| ||| | ||||| || Sbjct 1159 ATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTAGTCCGGGGGA-TGCCCTCCTT 1101 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | |||| |||||||| || || || | || || Sbjct 1100 GTCCTGGATCTTCGCCTTCACGTTGTCTATGGTGTCAGATGACTCCACCTCCATGGTGAT 1041 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| || | ||| || |||||||||||||| Sbjct 1040 AGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 1005 >seq221428 Length=956 Score = 105 bits (116), Expect = 5e-18 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||| | || | ||| || |||||||||||||| |||||||||| || | ||| || | Sbjct 316 CGCGGGACAAGATGCAGAGTGGATTCTTTTTGGATGTTATAATATGCCAAGGTACGCCCA 257 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || | || ||| | || | || |||||||| || ||||| ||||| ||| Sbjct 256 TCCTCCAGCTGCCTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGAATCCCCTCCTTG 197 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||| || || ||||||||||| || Sbjct 196 TCCTGGATCTTGGCCTTCACATTATCGATGGTGTAGGAGCTCTCCACTTCAAGAGTAATG 137 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | |||||| || || ||||| |||||||| Sbjct 136 GTCTTCCAAGTTAATGTCTT-ACAAAAATCTGCAT 103 >seq622719 Length=209 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | || || ||||| || || || ||||| || ||||| Sbjct 1 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 60 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||| ||| | |||| | ||||||||||| ||| Sbjct 61 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 120 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || |||||| | || | |||||||| || || Sbjct 121 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACC 180 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||||| || || || ||||| || | ||| Sbjct 181 TCAAGGGTGATGGTCTTGCCGGTGAGGGT 209 >seq362679 Length=1828 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || || || ||||| || ||||| | |||||| ||| ||||| || Sbjct 1726 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCTTCGAGCTGC 1667 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || || | |||| | ||||| ||||| || || ||||| ||||| || | || Sbjct 1666 TTACCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1607 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| | || | ||||| || || || || || || || || ||||| || Sbjct 1606 GCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTG 1547 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || ||||||||||||||||| Sbjct 1546 AGAGTCTTAACAAATATCTGCAT 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375463747789041