Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq71034 87.8 3e-12 >seq71034 Length=3563 Score = 87.8 bits (96), Expect = 3e-12 Identities = 189/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 45014 GGCACACTGGGTAGCGGTAACCACTTCGTTGAAATCTGTTTAGACGAAGAGCAACGCGTT 45073 || || ||||| | ||||||||||||| | || ||||| | ||||| || ||| Sbjct 1937 GGAACGCTGGGAACCGGTAACCACTTCATCGAGATCTGCCTCGACGAGCAGGGCTTCGTC 1996 Query 45074 TGGGTAATGCTTCATTCAGGTTCACGTGGTATCGGCAACACCATCGGTAAATACTTCATC 45133 ||| | ||||| || || || || || || ||||||| | ||||| | |||||||| Sbjct 1997 TGGTTCATGCTGCACTCGGGCTCGCGCGGCGTCGGCAATGCGATCGGCACCCACTTCATC 2056 Query 45134 GAGAAAGCCAAAGAAGAGAT---GAACCGTTTCTTCGTCCATTTAGTTGACCAAGATCTG 45190 ||| | ||||| | || || || || ||| || || || | ||||| || ||| Sbjct 2057 GAGCAGGCCAAGCAGGACATGCGGACCCACTTCATCAACC-TTCCG--GACCAGGACCTG 2113 Query 45191 GCGTATCTCCCAGAAGGCTCTCAGTATTACGATGACTACTTGCAAGCGGTGCAATGGGCA 45250 || ||||| || || || | ||| | ||||| ||||| | ||||||| ||||| Sbjct 2114 GCCTATCTGCCGGAGGGAACGCAGCACTACGACGACTATATCGAAGCGGTCGGCTGGGCC 2173 Query 45251 CAAGACTTTGCAGCGC-TCAATCGTGCGGTGATGCTG 45286 || | || || ||| | || |||| |||||| || Sbjct 2174 CAGAAGTTCGC-CCGCATGAACCGTGAAGTGATGATG 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 844812696054240