Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq18201 156 1e-33 seq2008304 140 9e-29 seq18368 127 6e-25 seq138243 86.0 2e-12 >seq18201 Length=11482 Score = 156 bits (172), Expect = 1e-33 Identities = 213/295 (72%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 4941 GCTGAGCTGCTGTCCCAAGAAAACGAGATGCTGCTGGACATGCCCTGGTACGAGGGCAAC 5000 || ||||| |||||||| ||||| || || |||| | || | || |||||| Sbjct 6112 GCAGAGCTCCTGTCCCAGACCAACGAAATCCTCGAGGACGCGGTCTTCAAGGAAGGCAAC 6171 Query 5001 CTGCCCACCGGTTCGCGCATCACCACCCGCACCGGCCTGCCGGATGTGATCTACCGCAAG 5060 ||||||||||| ||| | |||| |||||||||||||||| | || ||||||||| | Sbjct 6172 CTGCCCACCGGCCACCGCGTGACCATCCGCACCGGCCTGCCGCAGGTCTTCTACCGCATG 6231 Query 5061 CTGAACAGTGGTGTGCCGCCGAGCAAATCGACCACCGCGCAAGTCGACGAGGCATGCGGC 5120 | ||| ||||| ||| | ||| ||||||| | | || || ||||| || |||||| Sbjct 6232 ATCAACCAGGGTGTTCCGACCTCCAAGTCGACCAGCACCCAGGTGGACGAAGCCTGCGGC 6291 Query 5121 ATCCTCGAAGCTCGCGGTCAGGTTGACGTGGACTTGGCGATGCTGAATGGCAACACCGCA 5180 || || ||||| ||| || | ||||| || |||||| |||||| |||||| || Sbjct 6292 ATTCTGGAAGCGCGCTCGCACATCGACGTCGAACTGGCGAAGCTGAACGGCAACGAAGCC 6351 Query 5181 GGTTTCCGCCTGTCTG-AGTCGCGTGCATTCATGGAAGCAATGAACCAGGCAATG 5234 | ||||||||||| | || || || ||||| || || ||||||||| | ||| Sbjct 6352 GCCTTCCGCCTGTCGGAAGACG-AAGCCTTCATCGAGGCGATGAACCAGACCATG 6405 Score = 129 bits (142), Expect = 2e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 5372 CAACACATCGATCTGGCTGATTGGCTGGGGCGAGAACACCGTCCACGGCATCTATCCGAA 5431 |||||| || |||| ||| | | ||||| |||||||||||| | || | ||||| Sbjct 6534 CAACACCTCCATCTACCTGGTGGTGTGGGGTGAGAACACCGTCTTCTGCCCGTTCCCGAA 6593 Query 5432 GGGTTCGCAAGCCGGCCTGGTCCACAAGGATCTTGGTGAAGGCGACGCTTTC-GATGCCA 5490 ||||||| |||| |||||| ||| |||| || || |||| | || | | || ||| Sbjct 6594 GGGTTCGAAAGCTGGCCTGCAGCACCAGGACCTGGGCGAAGA-GTCGGTCCCCGACTCCA 6652 Query 5491 GCGGCAACCGCTTCCGTGCCCTGATGGACCAATACCAGTGGAAGGCCGGCATTGCGGTCA 5550 ||||||| ||||| || ||| | | |||||||||||| |||| | | ||||| Sbjct 6653 ACGGCAACTTCTTCCAGGCGCTGCGTGCGCTGTACCAGTGGAAGAACGGCCTGGTGGTCA 6712 Query 5551 AGGACTGGCGTTACATCGTTCGCATCGCGAACATCGATGTCACCACCCTG 5600 |||||||||| || |||| ||||||||||||||| | || ||| |||| Sbjct 6713 AGGACTGGCGCTATGTCGTCCGCATCGCGAACATCAACGTGACCGACCTG 6762 Score = 95.1 bits (104), Expect = 3e-15 Identities = 249/374 (67%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 1540 CTGGAAGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTATGGCACAGGCATT 1599 ||||| || ||| || |||||||||| || ||| ||||| |||| || || ||||| Sbjct 1059 CTGGAGGATCAGCACCAGGCCGACGCCGTCTTCATCGACAACGGCTTCGGTACCGGCATC 1118 Query 1600 GTCAGCGCGGCTCGAGCAATGGGGCGCAACTGGACGCTTGTGCAGTTCGGGGGTGCCTCA 1659 ||||||| | || | ||||| |||| |||| ||| |||| | || | || Sbjct 1119 ATCAGCGCCGGCCGCACTATGGGCCGCACGTGGATCGGTGTCTGGTTCAGCGGCGAGTCG 1178 Query 1660 AGCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCGATGAAGGAATGGCTC 1719 ||| |||| ||||||||||| | |||||| ||||| | | || |||||| Sbjct 1179 TCCGACCCGGGCTGCCTGAACAAGCGGGCCGAGATGTGGAAGTCTGCGCGCGACTGGCTC 1238 Query 1720 AAGGCTGGCGG------CGAACTGAACGACCAGCAGACCGCAGACGAGATCTCGGCGCCT 1773 |||| ||||| ||| |||||||||| | || ||||| | | | ||| Sbjct 1239 AAGGACGGCGGCGCGATCGACAAGAACGACCAGGTGCTGGCCGACGACCTGACCGGGCCC 1298 Query 1774 GAGTATCGCGTCAAG-CTCGACGGCAAGATCGTTCTGGAGGACAAGGCCGAGTTGAAGAA 1832 ||| | | | | | || |||||||||||| |||||| ||| || ||||| Sbjct 1299 GAG-ACGGTGCCGCGCCTGGACGGCAAGATCCAGCTGGAGTCGAAGAAGGACATGAAG-- 1355 Query 1833 GCGTGCAGG-TATCAGCCCCA-ACCGGGCGGATGCGCTGGCTCTGACGTTCTCCTTCCCT 1890 ||| || || | | | ||| ||| | ||||| ||||||||| ||||| ||| ||| Sbjct 1356 GCGCGCGGGCTGCCGTCGCCAGGCCGCGGCGATGCCCTGGCTCTGTCGTTCGCCTACCCG 1415 Query 1891 GTGGTAAAGAAATC 1904 |||| ||||| || Sbjct 1416 GTGGCGAAGAAGTC 1429 >seq2008304 Length=471 Score = 140 bits (154), Expect = 9e-29 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 33064 CCACAGCTCGCGCCATGCGTCGAACGGATCGCACCAGTTCGACGGGTGAGTCTCATCGCG 33123 || ||||||||| | || ||| || | |||||||||| || || | |||||| || Sbjct 466 CCCCAGCTCGCGAAACGCATCGTCTGGGTGGCACCAGTTCTTGGGATGCGGCTCATCACG 407 Query 33124 GAAGGCGCTGTAGTAATGCGCGCCATCCCCGTGGTGAATGCGGTTCATTCCCTCGGCCAG 33183 | |||||||||||| ||||||| |||||||| |||||||| || || |||||||| Sbjct 406 CAGACCGCTGTAGTAATAGTCGCCATCACCGTGGTGGATGCGGTTGATGCCTTCGGCCAG 347 Query 33184 ATAGCGGCTCTCGAAAGCCGTCTCGCCCTCTCCATCCTGCAAGCGCTCGACCCGGACGCT 33243 ||||||||| || ||| | || || || || |||||||| | ||||| || || || Sbjct 346 ATAGCGGCTTTCAAAATCAGTATCCCCATCGCCATCCTGGAGCCGCTCCACGCGCACTGC 287 Query 33244 GACGATCTCCAGCAGGATGCGGGAGGCCCAGCGGGGCATGTGGATACTTGGCTTCCA 33300 | ||| ||||||| | |||| |||| | | |||||| ||| |||||||| Sbjct 286 GCTGATTTCCAGCACCAGGCGGCAGGCTCGATGCGGCATGCAGATGGCAGGCTTCCA 230 >seq18368 Length=1007 Score = 127 bits (140), Expect = 6e-25 Identities = 226/329 (69%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||||| ||||||||||||| | || ||| ||||| || |||| | | | Sbjct 488 CCGCCAAGCATCTGCATCTGCTC--------CG-CGACAATCTCGGTGCTGTATTGCTTC 438 Query 30116 TGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCTGA 30175 || ||||| | | || || | || ||| | || |||||||| ||| | | Sbjct 437 TGGCCGTCTTTCTCC---CATTGACGGGTTTTCAGACGACCCTCGATGTAGACCGACGAT 381 Query 30176 CCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGC 30235 |||||||| | | || || |||| |||||||| ||||||||| | | ||| ||| Sbjct 380 CCCTTCTTCAGATACTCGCCAGCGATTTCCGCCAAGCGACCGAAGAACGCGATGCGATGC 321 Query 30236 CATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCG 30295 ||||||||| || | || ||| | ||||||||| ||| ||| |||| || Sbjct 320 CATTCGGTGGCTTCGCGCATCTCACCGCTACCCTTGTCCTTAAAGCGATCGGTGGTTGCC 261 Query 30296 AGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCG 30355 | | ||||||||| ||||| | ||| ||||||| || || |||||||| ||| ||||| Sbjct 260 ACGCGGATGTTGGTGACCGCGTCGCCACTGGGCATGTAACGTGTTTCCGGATCAGCACCG 201 Query 30356 ACGTTGCCAACCAGAATGACTTTGTTAAC 30384 | |||||| || | ||||| ||||| || Sbjct 200 AGGTTGCCCACGATGATGACCTTGTTGAC 172 >seq138243 Length=1642 Score = 86.0 bits (94), Expect = 2e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 30175 ACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTG 30234 ||| ||||| | || ||| |||||||| || || | |||||||| | |||||| Sbjct 222 ACCTTTCTTCAGGTACTGGCCGACGATTTCAGCGAGACGGCCGAAGAAGGAGATGCGGTG 281 Query 30235 CCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGC 30294 ||||||||| | || | |||| |||||| | |||||| | | | |||||| Sbjct 282 CCATTCGGTCAGTTCTTTCTGCTCGCCGGTGTTGCGGTCCTTGGATTTGTACGAGGTGGC 341 Query 30295 GAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACC 30354 | | |||||||| | || | |||| | ||||| ||||| ||||||| || | || Sbjct 342 CACTGCGATGTTGGCGATGGCGTCGCCGCTCGGCATGTAGCGGATTTCCGGATCGCGGCC 401 Query 30355 GACGTTGCCAACCAGAATGACTTTGTTAAC 30384 || |||||| || | ||||| ||||| || Sbjct 402 GAGGTTGCCGACGATGATGACCTTGTTGAC 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142044761648144